Detailed information NTG0082836

Bioinformatically predicted

Overview

• Name: ssbB/cilA
• Type: Machinery gene
• Locus tag: R8559_RS09285
• Genome accession: NZ_AP026926
• Coordinates: 1788750..1789145 (-)
• Length: 131 a.a.
• NCBI ID: WP_000282467.1
• Uniprot ID: Q8DNH4
• Organism: Streptococcus pneumoniae strain PZ900700119
• Function: ssDNA binding (predicted from homology) DNA processing

Genomic Context

Location: 1783750..1794145

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
R8559_RS09260 (PC0116_18210)	-	1783973..1784506 (+)	534	WP_000775321.1	DUF402 domain-containing protein	-
R8559_RS11615 (PC0116_18220)	-	1784864..1785070 (-)	207	WP_000775827.1	transcriptional regulator	-
R8559_RS09270 (PC0116_18230)	-	1785230..1786459 (+)	1230	WP_000436324.1	ISL3 family transposase	-
R8559_RS09275 (PC0116_18240)	groL	1786558..1788180 (-)	1623	WP_000031585.1	chaperonin GroEL	-
R8559_RS09280 (PC0116_18250)	groES	1788196..1788480 (-)	285	WP_000917330.1	co-chaperone GroES	-
R8559_RS09285 (PC0116_18260)	ssbB/cilA	1788750..1789145 (-)	396	WP_000282467.1	single-stranded DNA-binding protein	Machinery gene
R8559_RS09290 (PC0116_18270)	-	1789223..1789984 (-)	762	WP_001107757.1	SDR family oxidoreductase	-
R8559_RS09295 (PC0116_18280)	ytpR	1790017..1790643 (-)	627	WP_000578302.1	YtpR family tRNA-binding protein	-
R8559_RS09300 (PC0116_18290)	-	1790659..1790976 (-)	318	WP_000615774.1	thioredoxin family protein	-
R8559_RS09305 (PC0116_18300)	-	1790973..1791272 (-)	300	WP_001818001.1	DUF4651 domain-containing protein	-
R8559_RS09310 (PC0116_18310)	-	1791455..1792711 (+)	1257	WP_000436627.1	ISL3 family transposase	-
R8559_RS09315	-	1792788..1792919 (+)	132	WP_001811306.1	hypothetical protein	-
R8559_RS09325	-	1793031..1793176 (-)	146	Protein_1827	cell wall-binding protein	-
R8559_RS09330 (PC0116_18320)	-	1793388..1794062 (-)	675	WP_000725722.1	LiaF transmembrane domain-containing protein	-

Sequence

Protein

• Length: 131 a.a.
• Molecular weight: 14925.89 Da
• Isoelectric Point: 5.9409

>NTDB_id=82836 R8559_RS09285 WP_000282467.1 1788750..1789145(-) (ssbB/cilA) [Streptococcus pneumoniae strain PZ900700119]
MYNKVIMIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGRLAETLASYATKGSLISVDGELRTR
RFEKNGQMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide

• Length: 396 bp

>NTDB_id=82836 R8559_RS09285 WP_000282467.1 1788750..1789145(-) (ssbB/cilA) [Streptococcus pneumoniae strain PZ900700119]
ATGTATAATAAAGTTATCATGATTGGGCGTTTAACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCGGTAGC
GCGAGCAACTATCGCTGTGAACCGTCGTTACAAAGACCAAAACGGTGAACGTGAAGCTGATTTTGTCAATATGGTCCTAT
GGGGCAGACTAGCAGAAACTTTGGCAAGCTACGCAACCAAAGGTAGTCTCATTTCCGTTGATGGAGAATTGCGTACCCGT
CGCTTTGAGAAAAATGGCCAAATGAACTACGTGACCGAAGTACTTGTCACAGGATTCCAACTCTTGGAAAGTCGTGCTCA
ACGTGCTATGCGTGAAAATAATGCAGGCCAAGATTTGGCAGATTTGGTCTTGGAAGAGGAAGAATTGCCATTTTAA

Domains

Predicted by InterProScan.

• Single-strand binding protein family (SSB) (3-101)

3D structure

• AlphaFold DB: Q8DNH4

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ssbB/cilA	Streptococcus pneumoniae D39	100	100	1
ssbB/cilA	Streptococcus pneumoniae Rx1	100	100	1
ssbB/cilA	Streptococcus pneumoniae R6	100	100	1
ssbB/cilA	Streptococcus pneumoniae TIGR4	99.237	100	0.992
ssbB/cilA	Streptococcus mitis SK321	98.473	100	0.985
ssbB/cilA	Streptococcus mitis NCTC 12261	98.473	100	0.985
ssbA	Streptococcus mutans UA159	74.809	100	0.748
ssbB	Streptococcus sobrinus strain NIDR 6715-7	70.229	100	0.702
ssbB	Lactococcus lactis subsp. cremoris KW2	59.821	85.496	0.511
ssbA	Bacillus subtilis subsp. subtilis str. 168	50.943	80.916	0.412
ssb	Latilactobacillus sakei subsp. sakei 23K	46.903	86.26	0.405