Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QLQ87_RS12830 Genome accession   NZ_CP124841
Coordinates   2789697..2790938 (+) Length   413 a.a.
NCBI ID   WP_059113460.1    Uniprot ID   A0AAP3UVF0
Organism   Aeromonas salmonicida strain 57     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2784697..2795938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QLQ87_RS12805 (QLQ87_12805) ampD 2785030..2785602 (-) 573 WP_212539623.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  QLQ87_RS12810 (QLQ87_12810) - 2785752..2786222 (+) 471 WP_265466616.1 retropepsin-like aspartic protease -
  QLQ87_RS12815 (QLQ87_12815) nadC 2786227..2787084 (+) 858 WP_282683318.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QLQ87_RS12820 (QLQ87_12820) tapA 2787420..2787851 (+) 432 WP_282683319.1 type IVa pilus major pilin TapA -
  QLQ87_RS12825 (QLQ87_12825) pilB 2787858..2789564 (+) 1707 WP_282683320.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  QLQ87_RS12830 (QLQ87_12830) pilC 2789697..2790938 (+) 1242 WP_059113460.1 type II secretion system F family protein Machinery gene
  QLQ87_RS12835 (QLQ87_12835) pilD 2791002..2791877 (+) 876 WP_282683321.1 A24 family peptidase Machinery gene
  QLQ87_RS12840 (QLQ87_12840) coaE 2791897..2792511 (+) 615 WP_282683322.1 dephospho-CoA kinase -
  QLQ87_RS12845 (QLQ87_12845) zapD 2792549..2793271 (+) 723 WP_021140336.1 cell division protein ZapD -
  QLQ87_RS12850 (QLQ87_12850) yacG 2793281..2793475 (+) 195 WP_005314167.1 DNA gyrase inhibitor YacG -
  QLQ87_RS12855 (QLQ87_12855) mutT 2793553..2793960 (-) 408 WP_005314168.1 8-oxo-dGTP diphosphatase MutT -
  QLQ87_RS12860 (QLQ87_12860) - 2793969..2795158 (-) 1190 Protein_2496 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45324.44 Da        Isoelectric Point: 9.8834

>NTDB_id=828316 QLQ87_RS12830 WP_059113460.1 2789697..2790938(+) (pilC) [Aeromonas salmonicida strain 57]
MATLTQKQNAPKKVFAFRWSGVNRKGQKVSGELQADSINTVKAELRKQGVNVTRVSKKSQGLFSKGGARIKPMDIAIVSR
QITTMLSAGVPLVQSLQIIARSHEKAAMRELMGQIAADVETGTPMSDALRRHPRHFDALYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPAMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPIFTQFVIGISRFMQNWWYVIFGGIG
LGIFLYVRAWRASQKVKDNTDKFILTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVVA
MYLPIFKLGDVVG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=828316 QLQ87_RS12830 WP_059113460.1 2789697..2790938(+) (pilC) [Aeromonas salmonicida strain 57]
ATGGCAACGCTAACGCAAAAACAGAATGCCCCCAAGAAAGTCTTTGCCTTCCGCTGGAGCGGGGTAAATCGCAAGGGTCA
GAAGGTATCCGGCGAGCTACAGGCCGACAGCATCAATACGGTCAAGGCCGAACTGCGCAAGCAGGGGGTCAATGTCACCA
GAGTGAGCAAAAAGAGCCAGGGGCTTTTTTCCAAGGGTGGCGCCAGGATCAAACCGATGGATATCGCCATCGTTTCCCGT
CAGATCACCACAATGCTCTCCGCCGGGGTACCTCTGGTACAGAGCCTGCAGATCATAGCCCGCAGCCATGAAAAAGCCGC
GATGCGCGAGCTGATGGGCCAGATCGCTGCCGATGTGGAGACAGGCACCCCGATGTCAGATGCCCTGCGCCGCCACCCTC
GCCACTTTGATGCACTCTATTGCGATCTGGTGGAAGCAGGCGAGCAATCCGGCGCGCTGGAAACCATCTACGATCGCATC
GCCACCTATAGAGAAAAGTCGGAAGCGCTCAAGTCCAAGATCAAAAAGGCGATGTTCTATCCGGCCATGGTCATCCTGGT
CGCCATCGTCGTCACCTCCATACTGCTGCTGTTCGTCATCCCGCAGTTCGAGGACATCTTCAAGAGCTTTGGTGCCGAGC
TGCCCATCTTCACCCAGTTTGTCATCGGCATCTCCCGCTTCATGCAGAATTGGTGGTATGTGATTTTTGGCGGAATAGGG
CTTGGCATTTTCCTTTATGTACGAGCGTGGCGCGCGTCCCAGAAGGTCAAAGACAACACAGACAAGTTCATCCTCACCAT
TCCCGTAGTGGGCATGATACTGCACAAGGCGGCCATGGCCCGCTTCGCCCGCACCCTCTCCACCACCTTTTCGGCGGGCA
TACCCCTGGTGGATGCACTGATCTCGGCCGCCGGCGCCTCAGGCAACTATGTCTATCGTACCGCCGTCATGGCCATTCGC
AACGAGGTGGTAGCCGGCATGCAGATCAACGTGGCCATGCGCACCGTGGATCTCTTCCCCGACATGGTGATCCAGATGGT
GATGATCGGTGAGGAGTCAGGCGCCATCGATGATATGCTCTCCAAGGTCGCGACCATCTTCGAGCAAGAGGTCGATGATT
TGGTCGACGGTCTCACCAGCCTGCTGGAGCCTCTCATCATGGTGGTGCTGGGGGTACTGGTCGGCGGCATGGTCGTCGCC
ATGTACCTGCCCATCTTCAAGCTGGGTGACGTGGTAGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

56.313

95.884

0.54
  pilC Acinetobacter baumannii D1279779

54.5

96.852

0.528
  pilC Acinetobacter baylyi ADP1

52.393

96.126

0.504
  pilC Legionella pneumophila strain ERS1305867

50.617

98.063

0.496
  pilC Vibrio cholerae strain A1552

47.382

97.094

0.46
  pilC Vibrio campbellii strain DS40M4

46.535

97.821

0.455
  pilG Neisseria gonorrhoeae MS11

40.247

98.063

0.395
  pilG Neisseria meningitidis 44/76-A

40

98.063

0.392
  pilC Thermus thermophilus HB27

37.75

96.852

0.366