NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	QLQ87_RS12835	Genome accession	NZ_CP124841
Coordinates	2791002..2791877 (+)	Length	291 a.a.
NCBI ID	WP_282683321.1	Uniprot ID	-
Organism	Aeromonas salmonicida strain 57
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2786002..2796877

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QLQ87_RS12815 (QLQ87_12815)	nadC	2786227..2787084 (+)	858	WP_282683318.1	carboxylating nicotinate-nucleotide diphosphorylase	-
QLQ87_RS12820 (QLQ87_12820)	tapA	2787420..2787851 (+)	432	WP_282683319.1	type IVa pilus major pilin TapA	-
QLQ87_RS12825 (QLQ87_12825)	pilB	2787858..2789564 (+)	1707	WP_282683320.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
QLQ87_RS12830 (QLQ87_12830)	pilC	2789697..2790938 (+)	1242	WP_059113460.1	type II secretion system F family protein	Machinery gene
QLQ87_RS12835 (QLQ87_12835)	pilD	2791002..2791877 (+)	876	WP_282683321.1	A24 family peptidase	Machinery gene
QLQ87_RS12840 (QLQ87_12840)	coaE	2791897..2792511 (+)	615	WP_282683322.1	dephospho-CoA kinase	-
QLQ87_RS12845 (QLQ87_12845)	zapD	2792549..2793271 (+)	723	WP_021140336.1	cell division protein ZapD	-
QLQ87_RS12850 (QLQ87_12850)	yacG	2793281..2793475 (+)	195	WP_005314167.1	DNA gyrase inhibitor YacG	-
QLQ87_RS12855 (QLQ87_12855)	mutT	2793553..2793960 (-)	408	WP_005314168.1	8-oxo-dGTP diphosphatase MutT	-
QLQ87_RS12860 (QLQ87_12860)	-	2793969..2795158 (-)	1190	Protein_2496	tetratricopeptide repeat protein	-

Sequence

Protein

Download Length: 291 a.a. Molecular weight: 32473.85 Da Isoelectric Point: 7.0169

                                >NTDB_id=828317 QLQ87_RS12835 WP_282683321.1 2791002..2791877(+) (pilD) [Aeromonas salmonicida strain 57]

MTLLLELAHGLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFSSDTPQPEADERYNLMVPRSCCPHCNH

PITALENIPLLSWLWLKGRCRGCQAAISARYPLVELLTALLSVAVAMVITPGWGMLAALLLTWVLVALTFIDLDKMLLPD

QLTLPLLWGGLMFNLLGGYVPLGDAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSS

MVGAIFGIGLILLRNHHQSKPIPFGPYLAIAGWIALLWGDSITRWYLSTIL

Nucleotide

Download Length: 876 bp

                                >NTDB_id=828317 QLQ87_RS12835 WP_282683321.1 2791002..2791877(+) (pilD) [Aeromonas salmonicida strain 57]

ATGACACTTCTTCTCGAGCTGGCACACGGCTTGCCATGGCTCTACTTCTCGCTGGTATTTCTCTTCTCCCTGATGATCGG

CAGCTTTCTCAACGTGGTGATCCACCGCCTGCCCATCATGCTGGAACGGGAGTGGCAGGCCGAATATCGCAGCTATTTCA

GTTCAGACACGCCGCAGCCAGAAGCTGACGAGCGCTACAATCTGATGGTGCCGCGCTCCTGCTGCCCTCACTGCAATCAC

CCCATAACGGCACTGGAAAACATACCCCTGCTGAGCTGGCTCTGGCTCAAAGGTCGCTGCCGGGGCTGCCAGGCCGCCAT

TTCGGCTCGCTATCCGCTGGTGGAGCTGCTGACCGCTCTGCTCTCGGTTGCCGTTGCCATGGTAATAACACCAGGCTGGG

GCATGCTGGCTGCTCTTCTGCTGACCTGGGTGCTGGTGGCGCTCACCTTTATCGATCTGGACAAGATGCTGCTGCCGGAC

CAGCTCACCTTGCCGCTGCTGTGGGGCGGGCTGATGTTCAACCTGCTTGGCGGATACGTGCCTCTCGGCGATGCTGTCAT

CGGCGCCATGGCAGGCTATCTGGTGCTGTGGAGCCTCTACTGGGCCTTCAAGCTGCTTACCGGCAAGGAGGGCATGGGCT

ATGGGGACTTCAAACTGCTGGCGGCGCTGGGAGCCTGGCTTGGCTGGCAGGCGCTGCCCATAGTACTGCTGCTCTCTTCT

ATGGTCGGCGCCATCTTCGGCATTGGCCTCATTTTGCTGCGCAACCATCACCAGAGCAAACCCATCCCCTTTGGCCCCTA

TCTCGCCATCGCAGGCTGGATCGCACTGCTCTGGGGCGATAGCATCACCCGCTGGTATCTCTCCACTATCCTCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(140-248)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-127)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio cholerae strain A1552	60.764	98.969	0.601
pilD	Vibrio campbellii strain DS40M4	55.208	98.969	0.546
pilD	Acinetobacter baumannii D1279779	55.019	92.44	0.509
pilD	Acinetobacter nosocomialis M2	55.019	92.44	0.509
pilD	Neisseria gonorrhoeae MS11	49.091	94.502	0.464

Detailed information NTG0828317