Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   QF117_RS06120 Genome accession   NZ_CP124614
Coordinates   38796..39908 (+) Length   370 a.a.
NCBI ID   WP_282388210.1    Uniprot ID   -
Organism   Vibrio sp. YMD68     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 33796..44908
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QF117_RS06100 (QF117_06100) rsmB 34501..35784 (-) 1284 WP_282388206.1 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB -
  QF117_RS06105 (QF117_06105) fmt 35910..36857 (-) 948 WP_282388207.1 methionyl-tRNA formyltransferase -
  QF117_RS06110 (QF117_06110) def 36949..37467 (-) 519 WP_017034332.1 peptide deformylase -
  QF117_RS06115 (QF117_06115) - 37607..38740 (+) 1134 WP_282388209.1 LysM peptidoglycan-binding domain-containing protein -
  QF117_RS06120 (QF117_06120) dprA 38796..39908 (+) 1113 WP_282388210.1 DNA-processing protein DprA Machinery gene
  QF117_RS06125 (QF117_06125) - 39911..40387 (+) 477 WP_017034329.1 DUF494 family protein -
  QF117_RS06130 (QF117_06130) - 40421..40981 (+) 561 WP_282388211.1 topoisomerase DNA-binding C4 zinc finger domain-containing protein -
  QF117_RS06135 (QF117_06135) - 41046..42170 (-) 1125 WP_282388212.1 5-(carboxyamino)imidazole ribonucleotide synthase -
  QF117_RS06140 (QF117_06140) purE 42174..42659 (-) 486 WP_017034326.1 5-(carboxyamino)imidazole ribonucleotide mutase -
  QF117_RS06145 (QF117_06145) hemF 43108..44025 (+) 918 WP_282389429.1 oxygen-dependent coproporphyrinogen oxidase -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 39936.44 Da        Isoelectric Point: 4.8890

>NTDB_id=826759 QF117_RS06120 WP_282388210.1 38796..39908(+) (dprA) [Vibrio sp. YMD68]
MLERELAAWLALSFTPKVGSKALARLIAIDAPCNLMDRDTESLSSLGLSLEQITYFKQGSERDVDLCMEWFQASNHHILT
PLDEEYPPLLKEIALPPPVLFVKGDVTTLSHPQIAMVGSRNASMEGLNSAQSYASRFVQHGLVVTSGLALGIDGYAHDGA
LSADGKTIAVLGSGLDQIYPSRHKSLAGRIIESGALVSEFAPQVKPRPTHFPRRNRIISGLSVGVLVVEAAEKSGSLITA
RYAAEQGRDVFAIPGSIYSGNNQGGNALIKNGACLVQNEQDVLDEIDTLVDWSIKQRFSSQAELFDQIESEQELPFPQLL
ANVGVEATPVDILASRTNIPVHEVMMQILELELSGHVVAVSGGYIRNGRG

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=826759 QF117_RS06120 WP_282388210.1 38796..39908(+) (dprA) [Vibrio sp. YMD68]
ATGTTAGAACGGGAGCTCGCCGCTTGGTTGGCGCTATCTTTTACCCCAAAGGTCGGCAGTAAAGCTCTCGCTCGGCTTAT
TGCGATTGACGCACCGTGTAATTTGATGGATAGAGATACGGAATCGTTGTCTTCTCTTGGTTTATCTCTTGAGCAGATTA
CCTATTTTAAGCAAGGCTCTGAGCGTGATGTGGACCTGTGTATGGAGTGGTTCCAGGCATCCAATCATCATATTTTGACG
CCTCTTGATGAAGAATACCCGCCTTTACTTAAAGAGATAGCCCTACCTCCGCCAGTTTTGTTCGTTAAAGGCGATGTCAC
CACACTGTCTCATCCACAAATTGCTATGGTTGGCAGCAGAAATGCCAGTATGGAAGGATTGAATAGTGCTCAGTCTTATG
CGAGTCGCTTTGTTCAGCATGGGTTAGTGGTGACGAGTGGTTTGGCTTTGGGGATTGATGGCTATGCTCATGATGGGGCG
CTGAGTGCTGACGGAAAAACCATTGCCGTGTTGGGTTCGGGATTGGATCAAATTTACCCATCTAGGCACAAGAGCCTAGC
AGGACGAATCATAGAATCAGGGGCTCTGGTGTCTGAGTTCGCTCCACAGGTTAAGCCAAGGCCAACGCACTTTCCGCGCA
GAAACCGCATTATCAGTGGTTTGTCGGTTGGGGTGCTGGTCGTTGAAGCGGCAGAAAAAAGTGGCTCACTGATCACCGCA
AGATACGCTGCAGAACAAGGGCGAGATGTGTTTGCGATTCCAGGCTCTATTTATAGCGGTAATAATCAAGGGGGGAATGC
ACTGATTAAAAACGGCGCTTGTTTGGTTCAAAATGAACAAGATGTTTTAGATGAAATCGATACTTTGGTAGACTGGTCGA
TTAAACAACGGTTCAGCAGTCAAGCTGAGCTGTTTGATCAAATAGAGAGTGAACAAGAATTGCCATTTCCACAACTGTTA
GCTAACGTAGGGGTAGAGGCTACGCCAGTTGATATTCTCGCGAGCAGGACCAATATACCTGTTCATGAAGTCATGATGCA
GATCCTAGAGCTTGAGCTTTCAGGGCATGTTGTTGCAGTTTCCGGTGGCTATATTCGAAATGGGAGGGGCTAG

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(72-277)

DprA winged helix domain (DprA_WH)

(317-363)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Vibrio campbellii strain DS40M4

65.668

99.189

0.651
  dprA Vibrio cholerae strain A1552

58.221

100

0.584
  dprA Glaesserella parasuis strain SC1401

45.333

100

0.459
  dprA Legionella pneumophila strain ERS1305867

43.454

97.027

0.422
  dprA Haemophilus influenzae Rd KW20

44.023

92.703

0.408
  dprA Neisseria meningitidis strain C311

36.111

100

0.386
  dprA Neisseria meningitidis MC58

36.111

100

0.386
  dprA Acinetobacter baumannii D1279779

43.333

89.189

0.386
  dprA Acinetobacter baumannii strain A118

43.03

89.189

0.384
  dprA Neisseria gonorrhoeae MS11

34.518

100

0.368
  dprA Neisseria gonorrhoeae strain FA1090

34.264

100

0.365