Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   QJV49_RS11940 Genome accession   NZ_CP124538
Coordinates   2396219..2396383 (+) Length   54 a.a.
NCBI ID   WP_225513088.1    Uniprot ID   A0AA49EVU3
Organism   Lactococcus sp. NH2-7C     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2391219..2401383
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJV49_RS11930 (QJV49_11930) - 2392656..2392970 (+) 315 WP_033900666.1 helix-turn-helix transcriptional regulator -
  QJV49_RS11935 (QJV49_11935) glf 2393109..2394245 (+) 1137 WP_241893107.1 UDP-galactopyranose mutase -
  QJV49_RS11940 (QJV49_11940) ssbB 2396219..2396383 (+) 165 WP_225513088.1 single-stranded DNA-binding protein Machinery gene
  QJV49_RS11945 (QJV49_11945) - 2396491..2396658 (+) 168 WP_161935051.1 hypothetical protein -
  QJV49_RS11950 (QJV49_11950) - 2397304..2397666 (-) 363 WP_033900923.1 hypothetical protein -
  QJV49_RS11955 (QJV49_11955) - 2397672..2397980 (-) 309 WP_225513090.1 hypothetical protein -
  QJV49_RS11960 (QJV49_11960) pepV 2398456..2399874 (+) 1419 WP_225513091.1 dipeptidase PepV -
  QJV49_RS11965 (QJV49_11965) acpS 2399977..2400336 (+) 360 WP_021468491.1 holo-ACP synthase -

Sequence

Protein


Download         Length: 54 a.a.        Molecular weight: 6111.97 Da        Isoelectric Point: 9.2784

>NTDB_id=826355 QJV49_RS11940 WP_225513088.1 2396219..2396383(+) (ssbB) [Lactococcus sp. NH2-7C]
MNNTHQIGHLSKDLELKKNPSNKSYVHFSIVVNRKSKNANGNCEADFIPCILWG

Nucleotide


Download         Length: 165 bp        

>NTDB_id=826355 QJV49_RS11940 WP_225513088.1 2396219..2396383(+) (ssbB) [Lactococcus sp. NH2-7C]
ATGAATAACACACACCAAATCGGACATTTGTCAAAAGACCTTGAACTTAAAAAGAATCCTTCTAATAAAAGCTATGTTCA
TTTTTCGATTGTGGTAAACCGTAAGTCTAAAAATGCAAATGGCAATTGTGAAGCTGACTTTATTCCATGTATTCTTTGGG
GATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-54)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

51.852

100

0.519
  ssbB/cilA Streptococcus pneumoniae R6

43.396

98.148

0.426
  ssbB/cilA Streptococcus pneumoniae Rx1

43.396

98.148

0.426
  ssbB/cilA Streptococcus pneumoniae D39

43.396

98.148

0.426
  ssbB/cilA Streptococcus mitis NCTC 12261

43.396

98.148

0.426
  ssbB/cilA Streptococcus pneumoniae TIGR4

45.833

88.889

0.407
  ssbB/cilA Streptococcus mitis SK321

45.833

88.889

0.407
  ssb Latilactobacillus sakei subsp. sakei 23K

41.509

98.148

0.407
  ssbA Bacillus subtilis subsp. subtilis str. 168

39.623

98.148

0.389
  ssbB Streptococcus sobrinus strain NIDR 6715-7

43.75

88.889

0.389
  ssbB Bacillus subtilis subsp. subtilis str. 168

37.736

98.148

0.37