Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   QJV49_RS09615 Genome accession   NZ_CP124538
Coordinates   1915112..1915501 (+) Length   129 a.a.
NCBI ID   WP_015425843.1    Uniprot ID   A0A443LH63
Organism   Lactococcus sp. NH2-7C     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 1915112..1934175 1915112..1915501 within 0


Gene organization within MGE regions


Location: 1915112..1934175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJV49_RS09615 (QJV49_09615) ssbB 1915112..1915501 (+) 390 WP_015425843.1 single-stranded DNA-binding protein Machinery gene
  QJV49_RS09620 (QJV49_09620) groES 1915621..1915905 (+) 285 WP_003131589.1 co-chaperone GroES -
  QJV49_RS09625 (QJV49_09625) groL 1915992..1917620 (+) 1629 WP_225512605.1 chaperonin GroEL -
  QJV49_RS09630 (QJV49_09630) - 1917666..1918478 (-) 813 WP_003131583.1 MBL fold metallo-hydrolase -
  QJV49_RS09635 (QJV49_09635) - 1918657..1920099 (-) 1443 WP_225512606.1 cell wall metabolism sensor histidine kinase WalK -
  QJV49_RS09640 (QJV49_09640) yycF 1920092..1920793 (-) 702 WP_003131580.1 response regulator YycF -
  QJV49_RS09645 (QJV49_09645) tmk 1920971..1921606 (+) 636 WP_225512607.1 dTMP kinase -
  QJV49_RS09650 (QJV49_09650) - 1921739..1922599 (+) 861 WP_225512608.1 DNA polymerase III subunit delta' -
  QJV49_RS09655 (QJV49_09655) ricT 1922651..1923433 (+) 783 WP_225512609.1 stage 0 sporulation family protein -
  QJV49_RS09660 (QJV49_09660) yabA 1923426..1923752 (+) 327 WP_003131570.1 DNA replication initiation control protein YabA -
  QJV49_RS09665 (QJV49_09665) rsmI 1923752..1924627 (+) 876 WP_225512610.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  QJV49_RS09670 (QJV49_09670) - 1924704..1924895 (-) 192 WP_003131566.1 hypothetical protein -
  QJV49_RS09675 (QJV49_09675) - 1925939..1926271 (-) 333 WP_129300062.1 hypothetical protein -
  QJV49_RS09680 (QJV49_09680) - 1926271..1926582 (-) 312 WP_225512611.1 hypothetical protein -
  QJV49_RS09685 (QJV49_09685) - 1926849..1927421 (-) 573 WP_225512612.1 hypothetical protein -
  QJV49_RS09690 (QJV49_09690) - 1927435..1927749 (-) 315 WP_129300060.1 hypothetical protein -
  QJV49_RS09695 (QJV49_09695) - 1927869..1928018 (-) 150 WP_153951467.1 hypothetical protein -
  QJV49_RS09700 (QJV49_09700) - 1928042..1928782 (-) 741 WP_281449134.1 hypothetical protein -
  QJV49_RS09705 (QJV49_09705) - 1928782..1929519 (-) 738 WP_225512614.1 phage replisome organiser protein -
  QJV49_RS09710 (QJV49_09710) - 1929532..1929858 (-) 327 WP_023163763.1 HTH domain-containing protein -
  QJV49_RS09715 (QJV49_09715) - 1930105..1930350 (-) 246 WP_225512615.1 hypothetical protein -
  QJV49_RS09720 (QJV49_09720) - 1930360..1930602 (-) 243 WP_054247183.1 hypothetical protein -
  QJV49_RS09725 (QJV49_09725) - 1930628..1930897 (-) 270 WP_156647477.1 hypothetical protein -
  QJV49_RS09730 (QJV49_09730) - 1930894..1931412 (-) 519 WP_225512616.1 hypothetical protein -
  QJV49_RS09735 (QJV49_09735) - 1931417..1931611 (-) 195 WP_225512617.1 DUF1655 domain-containing protein -
  QJV49_RS09740 (QJV49_09740) - 1931738..1932001 (-) 264 WP_309568399.1 hypothetical protein -
  QJV49_RS09745 (QJV49_09745) - 1932039..1932233 (-) 195 WP_039114633.1 transcriptional regulator -
  QJV49_RS09750 (QJV49_09750) - 1932380..1932916 (+) 537 WP_225512619.1 helix-turn-helix domain-containing protein -
  QJV49_RS09755 (QJV49_09755) - 1932976..1934175 (+) 1200 WP_225512620.1 site-specific integrase -

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14656.74 Da        Isoelectric Point: 8.3705

>NTDB_id=826349 QJV49_RS09615 WP_015425843.1 1915112..1915501(+) (ssbB) [Lactococcus sp. NH2-7C]
MNKTMLIGRLTSAPEISKTTNDKSYVRVTLAVNRRFKNEKGEREADFISIIIWGKSAETLVSYAKKGSLISIEGEIRTRN
YTDKQNQKHYVTEILGLSYDLLESRATIALRESAVKVEETLLDAEELPF

Nucleotide


Download         Length: 390 bp        

>NTDB_id=826349 QJV49_RS09615 WP_015425843.1 1915112..1915501(+) (ssbB) [Lactococcus sp. NH2-7C]
ATGAATAAAACCATGTTAATTGGACGCTTAACCAGTGCGCCAGAAATTTCAAAAACAACAAATGATAAATCATATGTCCG
TGTGACCTTAGCAGTCAATCGCCGTTTCAAAAATGAAAAAGGAGAACGAGAGGCAGATTTTATTTCAATTATTATTTGGG
GAAAATCTGCAGAAACTTTGGTTTCTTACGCAAAAAAAGGAAGTCTTATTTCAATTGAAGGAGAAATTAGAACTAGAAAT
TATACGGATAAGCAAAATCAAAAACATTATGTCACAGAAATCTTAGGACTGAGTTATGATTTACTTGAAAGTAGGGCAAC
AATCGCTTTACGAGAAAGCGCTGTAAAGGTTGAAGAAACCTTACTTGATGCGGAAGAACTCCCTTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A443LH63

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

90.698

100

0.907
  ssbB Streptococcus sobrinus strain NIDR 6715-7

60.769

100

0.612
  ssbB/cilA Streptococcus pneumoniae TIGR4

56.923

100

0.574
  ssbB/cilA Streptococcus pneumoniae Rx1

56.154

100

0.566
  ssbB/cilA Streptococcus pneumoniae D39

56.154

100

0.566
  ssbB/cilA Streptococcus pneumoniae R6

56.154

100

0.566
  ssbB/cilA Streptococcus mitis NCTC 12261

56.154

100

0.566
  ssbB/cilA Streptococcus mitis SK321

56.154

100

0.566
  ssbA Streptococcus mutans UA159

56.154

100

0.566
  ssb Latilactobacillus sakei subsp. sakei 23K

43.75

86.822

0.38
  ssbA Bacillus subtilis subsp. subtilis str. 168

44.762

81.395

0.364