Detailed information    

insolico Bioinformatically predicted

Overview

Name   cinA   Type   Machinery gene
Locus tag   SE864_RS10085 Genome accession   NZ_CP138369
Coordinates   2003586..2004845 (-) Length   419 a.a.
NCBI ID   WP_001200975.1    Uniprot ID   Q3JYN0
Organism   Streptococcus agalactiae strain SagR31     
Function   facilitate localization of RecA (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1998586..2009845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE864_RS10050 (SE864_10050) - 1998649..1999002 (-) 354 WP_001227347.1 helix-turn-helix transcriptional regulator -
  SE864_RS10055 (SE864_10055) - 1999507..1999929 (+) 423 WP_000804884.1 sigma-70 family RNA polymerase sigma factor -
  SE864_RS10060 (SE864_10060) - 1999926..2000156 (+) 231 WP_000857133.1 helix-turn-helix domain-containing protein -
  SE864_RS10065 (SE864_10065) - 2000382..2000633 (-) 252 WP_001845478.1 hypothetical protein -
  SE864_RS10070 (SE864_10070) - 2000617..2000820 (+) 204 WP_000814511.1 excisionase -
  SE864_RS10075 (SE864_10075) - 2000902..2002119 (+) 1218 WP_001291561.1 tyrosine-type recombinase/integrase -
  SE864_RS10080 (SE864_10080) recA 2002373..2003512 (-) 1140 WP_001085741.1 recombinase RecA -
  SE864_RS10085 (SE864_10085) cinA 2003586..2004845 (-) 1260 WP_001200975.1 competence/damage-inducible protein A Machinery gene
  SE864_RS10090 (SE864_10090) - 2004934..2005485 (-) 552 WP_000817341.1 DNA-3-methyladenine glycosylase I -
  SE864_RS10095 (SE864_10095) ruvA 2005508..2006098 (-) 591 WP_000272490.1 Holliday junction branch migration protein RuvA Machinery gene
  SE864_RS10100 (SE864_10100) - 2006100..2007332 (-) 1233 WP_000657472.1 MFS transporter -
  SE864_RS10105 (SE864_10105) hexB 2007364..2009337 (-) 1974 WP_000034614.1 DNA mismatch repair endonuclease MutL Machinery gene
  SE864_RS10110 (SE864_10110) - 2009563..2009766 (+) 204 WP_000191849.1 cold-shock protein -

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45454.24 Da        Isoelectric Point: 5.5601

>NTDB_id=825474 SE864_RS10085 WP_001200975.1 2003586..2004845(-) (cinA) [Streptococcus agalactiae strain SagR31]
MRAEIIAVGTEILTGQIVNTNAQFLSEKMAELGIDIYFQTAVGDNEERLLSLLDIASQRSQLVILCGGLGPTEDDLTKQT
LAKFLGKSLTVDLLASQKLDRFFASRPQFARTPNNERQAQLVEGSIPLQNLTGLAVGGIVTSKGVQYMVLPGPPSELNPM
VMEQVVPILSNNGTKLYSRVLRFFGIGESQLVTILEDIIKNQTDPTIAPYAKVGEVTLRLSTKAENQDEADFKLDSLEKE
ILALKTLDNRKLKDLLYGYGDNNSMARTVLELLKVQNKTITAAESLTAGLFQSQLAEFSGASQVFNGGFTTYSMEAKSQL
LGIPKKKLQEYGVISHFTAEAMAQQARQLLKADFGIGLTGVAGPDELEGYPAGTVFIGIATPEGVSSIKVSIGGKSRSDV
RHISTLHAFDLVRRALLKI

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=825474 SE864_RS10085 WP_001200975.1 2003586..2004845(-) (cinA) [Streptococcus agalactiae strain SagR31]
GTGAGGGCTGAAATTATCGCTGTAGGAACAGAAATTTTAACAGGACAGATCGTTAATACAAACGCACAATTTTTGTCGGA
GAAAATGGCAGAATTGGGAATTGATATTTATTTCCAGACAGCTGTAGGAGACAATGAGGAACGTTTATTATCGCTTTTAG
ATATAGCTAGTCAGCGCAGTCAATTGGTTATCCTATGTGGTGGACTTGGACCTACAGAGGATGATTTAACGAAACAAACT
TTGGCTAAATTTTTAGGTAAATCATTAACAGTGGATTTATTAGCTAGTCAAAAATTGGATCGTTTTTTTGCAAGTCGTCC
TCAGTTTGCTAGAACGCCAAATAATGAACGACAAGCTCAATTGGTTGAAGGCTCAATACCTCTACAAAACCTTACTGGTC
TAGCTGTTGGTGGTATCGTTACATCTAAGGGAGTCCAATATATGGTTTTACCAGGTCCGCCTAGTGAATTAAATCCAATG
GTTATGGAGCAGGTGGTACCTATTTTGTCAAATAATGGTACAAAATTATATTCACGTGTATTGAGATTCTTTGGTATCGG
TGAGAGTCAGTTAGTCACAATCTTAGAAGACATAATTAAGAATCAGACAGATCCAACTATAGCACCATATGCAAAGGTTG
GTGAGGTAACTTTAAGGTTATCAACGAAAGCTGAAAATCAGGATGAAGCCGACTTTAAATTAGATAGCTTAGAAAAAGAA
ATACTTGCTCTTAAGACATTAGATAACCGTAAATTAAAAGATTTATTATATGGTTATGGTGATAATAATAGTATGGCACG
TACTGTTTTAGAATTATTGAAAGTACAAAATAAAACGATTACTGCCGCAGAGAGCTTAACAGCAGGGTTATTTCAATCTC
AGTTAGCAGAATTTTCTGGTGCTTCGCAAGTTTTTAATGGTGGTTTTACGACCTATAGTATGGAAGCAAAATCACAACTT
CTCGGCATCCCTAAGAAAAAATTGCAAGAATATGGAGTTATCAGTCATTTTACAGCTGAGGCAATGGCTCAGCAAGCTCG
CCAACTTTTAAAAGCAGATTTTGGTATCGGTTTAACGGGAGTTGCTGGTCCTGATGAGTTGGAAGGATACCCTGCAGGTA
CAGTTTTTATTGGGATTGCAACCCCTGAAGGCGTTTCTTCTATTAAAGTATCGATTGGAGGGAAGAGCCGCTCAGATGTC
CGTCATATCAGTACTTTACATGCTTTTGACCTGGTGCGTAGGGCTTTATTAAAGATATAA

Domains

Predicted by InterProScan.

Damage-inducible protein CinA KH domain (CinA_KH)

(178-241)

Probable molybdopterin binding domain (MoCF_biosynth)

(5-170)

Competence-damaged protein (CinA)

(263-415)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3JYN0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  cinA Streptococcus mitis SK321

71.223

99.523

0.709
  cinA Streptococcus mitis NCTC 12261

70.983

99.523

0.706
  cinA Streptococcus pneumoniae TIGR4

69.784

99.523

0.695
  cinA Streptococcus pneumoniae R36A

69.784

99.523

0.695
  cinA Streptococcus pneumoniae Rx1

69.784

99.523

0.695
  cinA Streptococcus pneumoniae R6

69.784

99.523

0.695
  cinA Streptococcus pneumoniae D39

69.544

99.523

0.692
  cinA Streptococcus mutans UA159

67.866

99.523

0.675
  cinA Streptococcus suis isolate S10

54.567

99.284

0.542
  cinA Bacillus subtilis subsp. subtilis str. 168

43.541

99.761

0.434