Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   SE864_RS10095 Genome accession   NZ_CP138369
Coordinates   2005508..2006098 (-) Length   196 a.a.
NCBI ID   WP_000272490.1    Uniprot ID   Q3JYM8
Organism   Streptococcus agalactiae strain SagR31     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2000508..2011098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SE864_RS10070 (SE864_10070) - 2000617..2000820 (+) 204 WP_000814511.1 excisionase -
  SE864_RS10075 (SE864_10075) - 2000902..2002119 (+) 1218 WP_001291561.1 tyrosine-type recombinase/integrase -
  SE864_RS10080 (SE864_10080) recA 2002373..2003512 (-) 1140 WP_001085741.1 recombinase RecA -
  SE864_RS10085 (SE864_10085) cinA 2003586..2004845 (-) 1260 WP_001200975.1 competence/damage-inducible protein A Machinery gene
  SE864_RS10090 (SE864_10090) - 2004934..2005485 (-) 552 WP_000817341.1 DNA-3-methyladenine glycosylase I -
  SE864_RS10095 (SE864_10095) ruvA 2005508..2006098 (-) 591 WP_000272490.1 Holliday junction branch migration protein RuvA Machinery gene
  SE864_RS10100 (SE864_10100) - 2006100..2007332 (-) 1233 WP_000657472.1 MFS transporter -
  SE864_RS10105 (SE864_10105) hexB 2007364..2009337 (-) 1974 WP_000034614.1 DNA mismatch repair endonuclease MutL Machinery gene
  SE864_RS10110 (SE864_10110) - 2009563..2009766 (+) 204 WP_000191849.1 cold-shock protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21696.94 Da        Isoelectric Point: 5.7488

>NTDB_id=825475 SE864_RS10095 WP_000272490.1 2005508..2006098(-) (ruvA) [Streptococcus agalactiae strain SagR31]
MYDYIKGKLSKITAKFIVVETAGLGYVIYVANPYSFSGYVNQEVTIYLHQVIRDDAHLLFGFHTENEKEIFLNLISVSGI
GPTTALAIIAVDDNEGLVSAIDNSDIKYLTKFPKIGKKTAQQMILDLSGKFVEASGESATSRKVSSEQNSNLEEAMEALL
ALGYKATELKKVKAFFEGTNETVEQYIKSSLKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=825475 SE864_RS10095 WP_000272490.1 2005508..2006098(-) (ruvA) [Streptococcus agalactiae strain SagR31]
ATGTACGATTATATTAAAGGAAAATTGAGTAAAATAACAGCTAAATTTATTGTTGTGGAAACAGCTGGATTGGGATACGT
GATATATGTGGCAAATCCCTACTCTTTTTCAGGTTACGTTAATCAAGAAGTTACCATCTACTTACATCAAGTCATTCGCG
ATGATGCACATCTTTTATTTGGTTTTCATACGGAAAATGAAAAAGAAATTTTTCTTAATTTAATTTCAGTATCAGGAATT
GGTCCAACGACCGCTTTAGCAATTATTGCAGTCGATGACAATGAAGGTCTCGTAAGTGCCATTGATAATAGTGATATTAA
GTATTTGACTAAATTTCCAAAGATAGGAAAAAAAACAGCACAACAGATGATCCTTGATTTGTCAGGGAAGTTTGTAGAAG
CTTCTGGTGAGAGTGCGACTAGTCGTAAGGTTAGCTCTGAGCAGAATAGCAATCTTGAAGAAGCTATGGAAGCTTTGTTA
GCGTTGGGGTATAAGGCGACTGAATTGAAAAAAGTAAAAGCCTTTTTTGAAGGTACGAACGAGACTGTGGAGCAATACAT
CAAATCTAGTTTGAAGATGTTGATGAAATAA

Domains

Predicted by InterProScan.

Helix-hairpin-helix domain (HHH_5)

(71-127)

RuvA N terminal domain (RuvA_N)

(1-61)

RuvA, C-terminal domain (RuvA_C)

(151-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q3JYM8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

67.513

100

0.679
  ruvA Streptococcus pneumoniae D39

67.513

100

0.679
  ruvA Streptococcus pneumoniae TIGR4

67.005

100

0.673
  ruvA Bacillus subtilis subsp. subtilis str. 168

39.409

100

0.408