Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   QE150_RS02350 Genome accession   NZ_CP123993
Coordinates   329894..330331 (+) Length   145 a.a.
NCBI ID   WP_005109337.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain Ab4294     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 324894..335331
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QE150_RS02330 (QE150_02330) - 326284..327171 (+) 888 WP_270901093.1 metal-dependent hydrolase -
  QE150_RS02335 (QE150_02335) - 327302..327892 (+) 591 WP_000846931.1 LemA family protein -
  QE150_RS02340 (QE150_02340) - 327914..328996 (+) 1083 WP_001246387.1 TPM domain-containing protein -
  QE150_RS02345 (QE150_02345) - 328990..329550 (+) 561 WP_000258946.1 TPM domain-containing protein -
  QE150_RS02350 (QE150_02350) pilA 329894..330331 (+) 438 WP_005109337.1 pilin Machinery gene
  QE150_RS02355 (QE150_02355) - 330384..331694 (+) 1311 WP_270901092.1 O-antigen ligase family protein -
  QE150_RS02360 (QE150_02360) - 331808..333436 (+) 1629 WP_270901091.1 O-antigen ligase family protein -
  QE150_RS02365 (QE150_02365) bfr 333478..333942 (-) 465 WP_000678123.1 bacterioferritin -
  QE150_RS02370 (QE150_02370) - 334187..334381 (-) 195 WP_000289091.1 bacterioferritin-associated ferredoxin -
  QE150_RS02375 (QE150_02375) - 334591..334974 (-) 384 WP_270901090.1 RidA family protein -

Sequence

Protein


Download         Length: 145 a.a.        Molecular weight: 15254.43 Da        Isoelectric Point: 7.7725

>NTDB_id=823644 QE150_RS02350 WP_005109337.1 329894..330331(+) (pilA) [Acinetobacter baumannii strain Ab4294]
MNAQKGFTLIELMIVVAIIGILAAIAIPAYQDYIVRSKVTEGLNLASSYKTTIAENAGNGSADLTVGVPNFSKTENVDSI
TADKSTGAIAIKYTDKAKSLTLTLTPQDDGKSLSAGKVPTNQITWVCTVDKPDNAKYVPANCRGS

Nucleotide


Download         Length: 438 bp        

>NTDB_id=823644 QE150_RS02350 WP_005109337.1 329894..330331(+) (pilA) [Acinetobacter baumannii strain Ab4294]
ATGAATGCACAAAAAGGTTTTACATTAATTGAACTCATGATCGTTGTAGCGATTATTGGTATTTTAGCAGCGATCGCGAT
TCCTGCGTATCAGGATTATATTGTTCGCTCAAAAGTAACAGAAGGTCTTAATTTGGCTTCATCATATAAAACGACTATTG
CTGAGAACGCAGGTAACGGTTCGGCGGATCTTACAGTAGGAGTTCCTAATTTTTCTAAGACAGAAAATGTTGATTCAATT
ACAGCGGATAAAAGTACTGGAGCTATTGCAATTAAATATACTGATAAGGCTAAAAGTTTAACTTTGACATTAACCCCTCA
AGATGACGGAAAATCTTTGTCAGCTGGTAAAGTGCCAACTAATCAGATTACTTGGGTGTGTACGGTAGATAAACCAGATA
ATGCTAAATATGTACCAGCTAATTGTCGTGGCTCATAA

Domains

Predicted by InterproScan.

Pilin (bacterial filament) (Pilin)

(35-143)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Ralstonia pseudosolanacearum GMI1000

49.045

100

0.531
  comP Acinetobacter baylyi ADP1

46.875

100

0.517
  pilA2 Legionella pneumophila strain ERS1305867

49.315

100

0.497
  pilA2 Legionella pneumophila str. Paris

49.315

100

0.497
  pilA Pseudomonas aeruginosa PAK

41.06

100

0.428
  pilA Acinetobacter baumannii strain A118

43.662

97.931

0.428
  pilA/pilAI Pseudomonas stutzeri DSM 10701

40

100

0.428
  pilA/pilA1 Eikenella corrodens VA1

39.103

100

0.421
  pilE Neisseria gonorrhoeae strain FA1090

37.107

100

0.407
  pilA Haemophilus influenzae 86-028NP

36.184

100

0.379