Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QG303_RS04780 Genome accession   NZ_CP123909
Coordinates   1043777..1044994 (+) Length   405 a.a.
NCBI ID   WP_095181835.1    Uniprot ID   -
Organism   Pseudomonas atacamensis strain MGMM4     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1038777..1049994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QG303_RS04760 (QG303_04760) - 1040218..1040517 (+) 300 WP_024014339.1 DUF2845 domain-containing protein -
  QG303_RS04765 (QG303_04765) - 1040777..1041130 (-) 354 WP_016773155.1 BON domain-containing protein -
  QG303_RS04770 (QG303_04770) pilA/pilAI 1041425..1041847 (-) 423 WP_122610922.1 pilin Machinery gene
  QG303_RS04775 (QG303_04775) pilB 1042074..1043774 (+) 1701 WP_258603690.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QG303_RS04780 (QG303_04780) pilC 1043777..1044994 (+) 1218 WP_095181835.1 type II secretion system F family protein Machinery gene
  QG303_RS04785 (QG303_04785) pilD 1044996..1045868 (+) 873 WP_281120865.1 A24 family peptidase Machinery gene
  QG303_RS04790 (QG303_04790) coaE 1045865..1046488 (+) 624 WP_281120866.1 dephospho-CoA kinase -
  QG303_RS04795 (QG303_04795) yacG 1046485..1046685 (+) 201 WP_016773149.1 DNA gyrase inhibitor YacG -
  QG303_RS04800 (QG303_04800) - 1046686..1046901 (-) 216 WP_056790451.1 hypothetical protein -
  QG303_RS04805 (QG303_04805) - 1046967..1047656 (-) 690 WP_281120867.1 energy-coupling factor ABC transporter permease -
  QG303_RS04810 (QG303_04810) - 1047847..1048473 (+) 627 WP_007909887.1 DUF1780 domain-containing protein -
  QG303_RS04815 (QG303_04815) - 1048470..1048997 (+) 528 WP_160768590.1 MOSC domain-containing protein -
  QG303_RS04820 (QG303_04820) - 1049049..1049222 (+) 174 WP_007909875.1 DUF3094 domain-containing protein -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44009.70 Da        Isoelectric Point: 10.1214

>NTDB_id=823028 QG303_RS04780 WP_095181835.1 1043777..1044994(+) (pilC) [Pseudomonas atacamensis strain MGMM4]
MAVKAAKVSVYAWEGTDRKGSKVSGELSGQNPALIKAQLRKQGINPGKVRKKSASLLTLGKRIKPQDIALFTRQMATMMK
AGVPLLQSFDIIGEGFENPAMRKLVDEVKQEVAAGNSFATALRKKPQYFDELYCNLVDAGEQSGALDTLLERVATYKEKS
EALKAKIKKAMTYPTAVVLVAAVVTGILLVKVVPQFQSVFSGFGAELPGFTLMIISLSEFMQQWWWAILFALVAAFFGTR
HALKTSQALRDRRDAWLLKLPLVGTLMYKSAVARFARTLSTTFAAGVPLVEALDSVAGATGNVVFKRAVLRVRQDVSTGM
QLNFSMRSTGVFPNMAVQMTAIGEESGALDDMLDKVAGFYEAEVDNMVDNLTSLMEPFIMVVLGVIVGGLVVAMYLPIFQ
LGSAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=823028 QG303_RS04780 WP_095181835.1 1043777..1044994(+) (pilC) [Pseudomonas atacamensis strain MGMM4]
ATGGCGGTCAAGGCAGCGAAAGTCAGCGTTTACGCTTGGGAAGGCACGGACCGCAAAGGCAGTAAAGTCAGCGGCGAATT
GAGCGGGCAGAACCCCGCACTGATCAAGGCGCAGCTGCGCAAACAGGGGATCAACCCGGGCAAGGTGCGCAAGAAATCCG
CCTCCCTGCTGACCTTGGGCAAACGCATCAAACCGCAGGACATCGCTCTCTTCACCCGGCAGATGGCGACCATGATGAAG
GCCGGCGTGCCGCTGTTGCAGTCCTTCGACATCATCGGCGAAGGCTTCGAAAACCCGGCCATGCGCAAACTGGTCGACGA
GGTCAAACAGGAGGTCGCGGCCGGTAACAGCTTCGCCACGGCCCTGCGCAAGAAACCGCAATACTTCGACGAGTTGTACT
GCAACCTGGTCGACGCCGGCGAACAGTCCGGTGCCCTCGACACTTTGCTCGAACGGGTCGCGACCTATAAGGAAAAAAGC
GAAGCGCTCAAGGCCAAGATCAAGAAGGCCATGACTTACCCTACTGCGGTGGTGCTGGTGGCGGCGGTGGTGACCGGCAT
TCTGCTGGTCAAGGTGGTGCCGCAGTTCCAGTCGGTATTCTCCGGGTTCGGCGCCGAACTGCCCGGCTTCACCCTGATGA
TCATCAGCCTGTCGGAATTCATGCAGCAGTGGTGGTGGGCGATTCTTTTTGCACTGGTGGCAGCGTTTTTCGGCACTCGC
CACGCGTTGAAGACTTCGCAGGCCCTGCGCGACCGGCGCGATGCCTGGCTGCTGAAGCTGCCACTGGTGGGCACCTTGAT
GTACAAGTCCGCCGTCGCCCGTTTTGCCCGCACCCTGTCGACCACTTTCGCCGCCGGCGTGCCGCTGGTGGAAGCACTGG
ATTCGGTCGCCGGCGCCACCGGCAACGTGGTGTTCAAGCGCGCGGTGCTGCGAGTTCGGCAGGACGTCTCGACCGGCATG
CAGCTGAATTTTTCGATGCGCAGCACCGGTGTGTTTCCCAATATGGCGGTGCAGATGACCGCCATCGGCGAGGAATCGGG
CGCGCTGGATGACATGCTCGACAAGGTCGCCGGTTTTTATGAAGCGGAAGTCGATAACATGGTCGACAACCTCACCAGCC
TGATGGAGCCGTTCATCATGGTGGTGCTGGGGGTCATCGTCGGTGGACTGGTGGTGGCCATGTACCTGCCGATCTTCCAA
CTCGGCTCAGCGATCTGA

Domains

Predicted by InterProScan.

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

74.074

100

0.741
  pilC Acinetobacter baylyi ADP1

59.069

100

0.595
  pilC Acinetobacter baumannii D1279779

58.333

100

0.588
  pilC Legionella pneumophila strain ERS1305867

52.75

98.765

0.521
  pilC Vibrio cholerae strain A1552

44.949

97.778

0.44
  pilG Neisseria gonorrhoeae MS11

43.424

99.506

0.432
  pilG Neisseria meningitidis 44/76-A

42.68

99.506

0.425
  pilC Vibrio campbellii strain DS40M4

41.872

100

0.42
  pilC Thermus thermophilus HB27

39.85

98.519

0.393