Detailed information
Bioinformatically predicted
Overview
| Name | pilD | Type | Machinery gene |
| Locus tag | QG303_RS04785 | Genome accession | NZ_CP123909 |
| Coordinates | 1044996..1045868 (+) | Length | 290 a.a. |
| NCBI ID | WP_281120865.1 | Uniprot ID | - |
| Organism | Pseudomonas atacamensis strain MGMM4 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1039996..1050868
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QG303_RS04760 (QG303_04760) | - | 1040218..1040517 (+) | 300 | WP_024014339.1 | DUF2845 domain-containing protein | - |
| QG303_RS04765 (QG303_04765) | - | 1040777..1041130 (-) | 354 | WP_016773155.1 | BON domain-containing protein | - |
| QG303_RS04770 (QG303_04770) | pilA/pilAI | 1041425..1041847 (-) | 423 | WP_122610922.1 | pilin | Machinery gene |
| QG303_RS04775 (QG303_04775) | pilB | 1042074..1043774 (+) | 1701 | WP_258603690.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| QG303_RS04780 (QG303_04780) | pilC | 1043777..1044994 (+) | 1218 | WP_095181835.1 | type II secretion system F family protein | Machinery gene |
| QG303_RS04785 (QG303_04785) | pilD | 1044996..1045868 (+) | 873 | WP_281120865.1 | A24 family peptidase | Machinery gene |
| QG303_RS04790 (QG303_04790) | coaE | 1045865..1046488 (+) | 624 | WP_281120866.1 | dephospho-CoA kinase | - |
| QG303_RS04795 (QG303_04795) | yacG | 1046485..1046685 (+) | 201 | WP_016773149.1 | DNA gyrase inhibitor YacG | - |
| QG303_RS04800 (QG303_04800) | - | 1046686..1046901 (-) | 216 | WP_056790451.1 | hypothetical protein | - |
| QG303_RS04805 (QG303_04805) | - | 1046967..1047656 (-) | 690 | WP_281120867.1 | energy-coupling factor ABC transporter permease | - |
| QG303_RS04810 (QG303_04810) | - | 1047847..1048473 (+) | 627 | WP_007909887.1 | DUF1780 domain-containing protein | - |
| QG303_RS04815 (QG303_04815) | - | 1048470..1048997 (+) | 528 | WP_160768590.1 | MOSC domain-containing protein | - |
| QG303_RS04820 (QG303_04820) | - | 1049049..1049222 (+) | 174 | WP_007909875.1 | DUF3094 domain-containing protein | - |
| QG303_RS04825 (QG303_04825) | - | 1049286..1050584 (+) | 1299 | WP_016773144.1 | NAD(P)/FAD-dependent oxidoreductase | - |
Sequence
Protein
Download Length: 290 a.a. Molecular weight: 31954.20 Da Isoelectric Point: 7.3451
>NTDB_id=823029 QG303_RS04785 WP_281120865.1 1044996..1045868(+) (pilD) [Pseudomonas atacamensis strain MGMM4]
MPIDELFAVYPLAFVVSALLLGLVVGSFLNVVVWRLPKMLERDWRQQAHDVLGLPSETPVPTYNLMLPHSACPHCGHRIR
PWENIPLLSYLCLRGRCSACSAPISKRYPLTELACGLLSAFIAWHLGFGWPASLLILLTWGLLAMSLIDCEHQLLPDVLV
LPLLWLGLIVNSFGVFVALPDALWGAVVGYLALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AILGVVMLRLRAQETSTPIPFGPFLAIAGWIALLWGGQITDFYWQSVGLK
MPIDELFAVYPLAFVVSALLLGLVVGSFLNVVVWRLPKMLERDWRQQAHDVLGLPSETPVPTYNLMLPHSACPHCGHRIR
PWENIPLLSYLCLRGRCSACSAPISKRYPLTELACGLLSAFIAWHLGFGWPASLLILLTWGLLAMSLIDCEHQLLPDVLV
LPLLWLGLIVNSFGVFVALPDALWGAVVGYLALWSVFWLFKLLTGKDGIGHGDFKLLALLGAWGGWQILPLTILLSSLVG
AILGVVMLRLRAQETSTPIPFGPFLAIAGWIALLWGGQITDFYWQSVGLK
Nucleotide
Download Length: 873 bp
>NTDB_id=823029 QG303_RS04785 WP_281120865.1 1044996..1045868(+) (pilD) [Pseudomonas atacamensis strain MGMM4]
ATGCCTATCGATGAACTGTTTGCCGTGTATCCGCTGGCCTTTGTGGTCAGCGCGCTGCTGCTCGGGCTGGTGGTCGGCAG
CTTCCTCAATGTTGTGGTGTGGCGCCTGCCGAAGATGCTTGAGCGTGACTGGCGCCAGCAAGCCCATGATGTGCTCGGCC
TGCCCAGCGAAACGCCCGTGCCGACCTACAACCTGATGCTGCCGCACTCCGCGTGCCCGCATTGCGGACACCGGATCCGC
CCGTGGGAAAACATTCCGCTGCTCAGTTATCTGTGCCTGCGCGGGCGCTGCTCGGCCTGTTCGGCGCCGATCAGTAAACG
TTACCCGCTGACCGAACTGGCCTGCGGCCTGCTCTCGGCATTCATCGCCTGGCATCTGGGCTTCGGCTGGCCGGCGAGCT
TGCTGATCTTGCTGACGTGGGGCTTGCTGGCGATGAGTCTGATCGACTGCGAACATCAGCTGCTGCCCGATGTGCTGGTG
CTGCCGCTGCTGTGGCTGGGGCTGATCGTCAACAGCTTCGGCGTGTTCGTGGCGTTGCCCGATGCGTTGTGGGGCGCGGT
GGTGGGTTATCTGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAACTGCTCACCGGCAAGGACGGCATCGGTCACGGCGATT
TCAAACTATTGGCCTTGCTTGGCGCTTGGGGTGGCTGGCAGATTCTGCCGCTGACGATTCTTCTATCGTCCTTGGTAGGG
GCGATTTTGGGCGTTGTCATGCTGCGCCTGCGCGCCCAGGAAACCTCGACGCCGATCCCCTTCGGGCCCTTTCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTGAAATGA
ATGCCTATCGATGAACTGTTTGCCGTGTATCCGCTGGCCTTTGTGGTCAGCGCGCTGCTGCTCGGGCTGGTGGTCGGCAG
CTTCCTCAATGTTGTGGTGTGGCGCCTGCCGAAGATGCTTGAGCGTGACTGGCGCCAGCAAGCCCATGATGTGCTCGGCC
TGCCCAGCGAAACGCCCGTGCCGACCTACAACCTGATGCTGCCGCACTCCGCGTGCCCGCATTGCGGACACCGGATCCGC
CCGTGGGAAAACATTCCGCTGCTCAGTTATCTGTGCCTGCGCGGGCGCTGCTCGGCCTGTTCGGCGCCGATCAGTAAACG
TTACCCGCTGACCGAACTGGCCTGCGGCCTGCTCTCGGCATTCATCGCCTGGCATCTGGGCTTCGGCTGGCCGGCGAGCT
TGCTGATCTTGCTGACGTGGGGCTTGCTGGCGATGAGTCTGATCGACTGCGAACATCAGCTGCTGCCCGATGTGCTGGTG
CTGCCGCTGCTGTGGCTGGGGCTGATCGTCAACAGCTTCGGCGTGTTCGTGGCGTTGCCCGATGCGTTGTGGGGCGCGGT
GGTGGGTTATCTGGCGCTGTGGTCGGTGTTCTGGCTGTTCAAACTGCTCACCGGCAAGGACGGCATCGGTCACGGCGATT
TCAAACTATTGGCCTTGCTTGGCGCTTGGGGTGGCTGGCAGATTCTGCCGCTGACGATTCTTCTATCGTCCTTGGTAGGG
GCGATTTTGGGCGTTGTCATGCTGCGCCTGCGCGCCCAGGAAACCTCGACGCCGATCCCCTTCGGGCCCTTTCTGGCAAT
TGCCGGCTGGATTGCCTTGCTCTGGGGTGGTCAAATAACCGACTTCTATTGGCAGTCTGTCGGTTTGAAATGA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilD | Vibrio cholerae strain A1552 |
53.873 |
97.931 |
0.528 |
| pilD | Vibrio campbellii strain DS40M4 |
52.281 |
98.276 |
0.514 |
| pilD | Neisseria gonorrhoeae MS11 |
45.296 |
98.966 |
0.448 |
| pilD | Acinetobacter nosocomialis M2 |
47.253 |
94.138 |
0.445 |
| pilD | Acinetobacter baumannii D1279779 |
47.08 |
94.483 |
0.445 |