Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   QG303_RS04875 Genome accession   NZ_CP123909
Coordinates   1060631..1061977 (+) Length   448 a.a.
NCBI ID   WP_024014351.1    Uniprot ID   V8R2K7
Organism   Pseudomonas atacamensis strain MGMM4     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1055631..1066977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QG303_RS04850 (QG303_04850) pgeF 1055846..1056568 (-) 723 WP_281120869.1 peptidoglycan editing factor PgeF -
  QG303_RS04855 (QG303_04855) rluD 1056565..1057527 (-) 963 WP_016773140.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QG303_RS04860 (QG303_04860) - 1057679..1058695 (+) 1017 WP_016773139.1 outer membrane protein assembly factor BamD -
  QG303_RS04865 (QG303_04865) - 1058822..1059055 (+) 234 WP_016773138.1 PP0621 family protein -
  QG303_RS04870 (QG303_04870) pilS 1059045..1060634 (+) 1590 WP_281120870.1 ATP-binding protein Regulator
  QG303_RS04875 (QG303_04875) pilR 1060631..1061977 (+) 1347 WP_024014351.1 sigma-54 dependent transcriptional regulator Regulator
  QG303_RS04880 (QG303_04880) thiO 1062066..1063166 (-) 1101 WP_122698539.1 glycine oxidase ThiO -
  QG303_RS04885 (QG303_04885) - 1063223..1063624 (-) 402 WP_122881712.1 type IV pilin protein -
  QG303_RS04890 (QG303_04890) - 1063640..1066729 (-) 3090 WP_281120871.1 PilC/PilY family type IV pilus protein -

Sequence

Protein


Download         Length: 448 a.a.        Molecular weight: 50162.46 Da        Isoelectric Point: 6.3600

>NTDB_id=823031 QG303_RS04875 WP_024014351.1 1060631..1061977(+) (pilR) [Pseudomonas atacamensis strain MGMM4]
MNTSPRQKILIVDDEPDIRELLEITLGRMKLETFSARNLGEAQALLQREHFDLCLTDMRLPDGTGLELVQHIQQRDPHLP
VAMITAYGSLETAINALKAGAFDFLTKPVELPRLRELVSSALRLPTAGGLSTAIERRLLGDSPPMANLRKQIDKLARSQA
PVYISGESGSGKELVARLIHEQGPRASQPFVPVNCGAIPSELMESEFFGHRKGSFTGAVEDKPGLFQAAHGGTLFLDEVA
DLPLSMQVKLLRAIQEKAVRSVGGQQETVVDVRILCATHKDLEAEVSAERFRQDLYYRLNVIELRVPSLRERRDDIEALA
MHVLKRLAKDTGQPEARLHPQALEALKNYRFPGNVRELENVLERAHTLCENRTIEAQDLRLSEGNCTADGAMADLTQVDN
LEDYLESVERKLILQALEETRWNRTAAAQRLSLSFRSMRYRLKKLGLD

Nucleotide


Download         Length: 1347 bp        

>NTDB_id=823031 QG303_RS04875 WP_024014351.1 1060631..1061977(+) (pilR) [Pseudomonas atacamensis strain MGMM4]
TTGAATACAAGCCCACGGCAAAAAATTCTAATCGTCGACGACGAACCGGATATCCGCGAGCTCCTGGAAATCACCCTGGG
ACGGATGAAACTCGAGACCTTCAGCGCACGTAATCTGGGCGAAGCTCAGGCGCTGTTGCAGCGCGAGCACTTTGACCTGT
GCCTGACCGACATGCGCCTGCCCGACGGCACCGGGCTGGAGCTGGTGCAACACATTCAGCAACGCGATCCACACCTGCCG
GTAGCGATGATCACGGCGTACGGAAGCCTGGAAACTGCGATCAATGCGCTGAAGGCCGGGGCGTTCGACTTCCTCACCAA
ACCGGTGGAACTGCCGCGCTTGCGCGAACTGGTCAGCTCGGCGCTGCGCCTGCCGACAGCGGGCGGCTTGAGCACGGCAA
TCGAGCGACGGTTGCTGGGCGATTCGCCGCCGATGGCTAATCTGCGCAAGCAGATCGACAAGCTCGCACGCAGTCAGGCA
CCGGTGTACATCAGTGGTGAATCCGGCAGCGGCAAAGAACTGGTCGCGCGTCTGATCCACGAACAAGGTCCGCGCGCCAG
CCAACCCTTTGTGCCGGTGAACTGCGGGGCAATTCCATCGGAACTGATGGAAAGCGAATTTTTCGGCCACCGCAAAGGCA
GTTTCACTGGAGCCGTCGAAGACAAGCCGGGGCTGTTTCAAGCGGCCCATGGCGGCACTCTGTTTCTCGATGAAGTCGCC
GATTTGCCACTGTCGATGCAAGTGAAACTGCTGCGGGCGATCCAGGAAAAAGCCGTGCGCAGCGTCGGCGGCCAGCAGGA
AACGGTGGTCGACGTACGCATCCTTTGCGCAACGCACAAAGACCTTGAAGCCGAAGTTTCGGCCGAACGCTTCCGCCAGG
ATCTGTATTACCGGCTCAACGTCATCGAACTGCGTGTGCCGTCCCTGCGCGAACGCCGTGACGACATCGAGGCGCTTGCC
ATGCACGTGCTCAAGCGCCTGGCCAAAGACACCGGACAACCCGAAGCGCGCCTGCACCCGCAAGCGCTGGAGGCGCTGAA
GAACTATCGCTTTCCCGGCAATGTGCGCGAACTGGAGAACGTCCTCGAACGCGCGCACACCCTGTGTGAAAACCGCACGA
TCGAGGCGCAGGATCTGCGTTTGAGCGAAGGCAATTGCACGGCGGACGGGGCGATGGCCGATCTGACGCAGGTCGACAAT
CTTGAGGATTATCTGGAGAGCGTCGAGAGGAAGCTGATTTTGCAGGCGCTGGAGGAAACCCGCTGGAACCGCACGGCGGC
GGCGCAGCGGTTGAGTCTGTCGTTTCGGTCGATGCGCTATCGGCTGAAGAAATTGGGCTTGGATTAG

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(9-118)

Sigma-54 interaction domain (Sigma54_activat)

(139-304)

Bacterial regulatory protein, Fis family (HTH_8)

(405-445)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB V8R2K7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

78.104

98.884

0.772
  pilR Acinetobacter baumannii strain A118

49.455

100

0.507
  luxO Vibrio cholerae strain A1552

40.098

91.295

0.366