Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   QG303_RS04870 Genome accession   NZ_CP123909
Coordinates   1059045..1060634 (+) Length   529 a.a.
NCBI ID   WP_281120870.1    Uniprot ID   -
Organism   Pseudomonas atacamensis strain MGMM4     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1054045..1065634
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QG303_RS04850 (QG303_04850) pgeF 1055846..1056568 (-) 723 WP_281120869.1 peptidoglycan editing factor PgeF -
  QG303_RS04855 (QG303_04855) rluD 1056565..1057527 (-) 963 WP_016773140.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  QG303_RS04860 (QG303_04860) - 1057679..1058695 (+) 1017 WP_016773139.1 outer membrane protein assembly factor BamD -
  QG303_RS04865 (QG303_04865) - 1058822..1059055 (+) 234 WP_016773138.1 PP0621 family protein -
  QG303_RS04870 (QG303_04870) pilS 1059045..1060634 (+) 1590 WP_281120870.1 ATP-binding protein Regulator
  QG303_RS04875 (QG303_04875) pilR 1060631..1061977 (+) 1347 WP_024014351.1 sigma-54 dependent transcriptional regulator Regulator
  QG303_RS04880 (QG303_04880) thiO 1062066..1063166 (-) 1101 WP_122698539.1 glycine oxidase ThiO -
  QG303_RS04885 (QG303_04885) - 1063223..1063624 (-) 402 WP_122881712.1 type IV pilin protein -

Sequence

Protein


Download         Length: 529 a.a.        Molecular weight: 58642.37 Da        Isoelectric Point: 6.8633

>NTDB_id=823030 QG303_RS04870 WP_281120870.1 1059045..1060634(+) (pilS) [Pseudomonas atacamensis strain MGMM4]
MVAEAANADQKQAQRLLRLYHLYRLSVGITLVLLISSNMDNRLLTSANDDLLRGGSWLYLIINMLLVVFLENTRRPAQLF
TLALVDVLLLCGLFYAAGGVASALGNLLVVSVAISNTLLRRRIGLLIAAIAAIGIVGLSFLLGLSRPLSANAYLQAGTLG
ALCFAASLLVQGLIRRLEVSETLAEQRASEVVSLEALNALILQRMRTGILVLDEQRRVQLANHSAQSLLGHSHLQGHMID
EYSPALVERLQLWRNNPTLRPQSLKIPGNGLELQPSFIALEQSPNQQTLVFLEDLAQITQQAQQLKLAALGRLTAGISHE
IRNPLGAISHAAQLLAESEELDSADRRLTQIIQDHSQRMNRVIENVLQLSRRQQSAPQRLDLKPWLEDFVGEIREQANER
QHIHLRINSGDFTTLMDPNQLRQILDNLIRNAWRHSAQLHEQADVWLALFVDPESQLAVLEVQDNGPGVSAEEQAHLFEP
FFTTSSQGTGLGLYLSRELCESNQARLDFKSRQGGGCFCITFAHGRKQS

Nucleotide


Download         Length: 1590 bp        

>NTDB_id=823030 QG303_RS04870 WP_281120870.1 1059045..1060634(+) (pilS) [Pseudomonas atacamensis strain MGMM4]
GTGGTCGCTGAGGCCGCCAACGCCGACCAGAAACAGGCGCAGCGTCTGCTGCGCCTTTATCACCTGTACCGTCTAAGTGT
CGGCATCACTCTGGTGCTGCTGATCTCCAGCAACATGGACAACCGCCTGCTGACGTCGGCCAACGACGATCTGCTGCGCG
GCGGCAGCTGGCTGTACCTGATCATCAACATGCTGCTGGTGGTGTTCCTCGAAAATACCCGGCGCCCGGCGCAGTTGTTC
ACCCTGGCGCTTGTCGATGTGCTGCTGTTGTGCGGCCTGTTCTACGCGGCCGGCGGCGTGGCCAGTGCGCTGGGCAATCT
GCTGGTGGTCTCGGTGGCGATCAGCAATACCCTGCTGCGCAGACGCATCGGCCTGCTGATTGCCGCCATTGCGGCGATCG
GCATTGTCGGCCTGAGCTTTCTGCTGGGGCTCAGCCGCCCCTTGAGCGCCAACGCCTACTTGCAAGCCGGCACCCTCGGT
GCGCTGTGCTTTGCCGCCTCGCTGCTGGTGCAAGGGTTGATCCGCCGCCTCGAAGTCAGCGAGACCCTGGCCGAACAGCG
CGCCAGCGAAGTGGTCAGCCTGGAGGCGCTGAACGCGTTGATCCTGCAACGCATGCGCACGGGGATTCTGGTGCTCGACG
AGCAACGTCGGGTGCAACTGGCCAATCACAGCGCGCAGAGTCTGCTCGGCCACAGTCACCTGCAAGGTCATATGATCGAC
GAATATTCCCCAGCACTGGTCGAGCGTCTGCAACTGTGGCGCAACAACCCGACCTTGCGCCCGCAGAGCCTGAAAATCCC
CGGCAATGGCCTTGAGCTGCAGCCCAGTTTCATCGCCCTTGAGCAGAGCCCGAACCAGCAGACGCTGGTGTTTCTCGAAG
ACCTGGCGCAAATCACCCAACAGGCGCAGCAACTCAAGCTCGCTGCGCTCGGGCGTTTGACCGCCGGCATCTCCCATGAA
ATTCGCAATCCACTGGGCGCGATCAGTCATGCCGCGCAGCTGTTGGCCGAGTCCGAGGAACTCGATAGCGCAGATCGGCG
TCTGACGCAGATTATTCAAGACCACTCCCAGCGCATGAACCGAGTCATCGAAAACGTCCTGCAACTGTCCCGCCGCCAGC
AAAGCGCGCCGCAACGGCTGGACCTCAAGCCGTGGCTGGAAGACTTCGTCGGCGAAATCCGCGAGCAGGCCAATGAGCGC
CAGCACATTCATCTGCGGATCAATTCCGGCGATTTCACCACGCTGATGGATCCCAACCAATTGCGGCAGATTCTCGACAA
TCTGATACGCAATGCCTGGCGTCACAGTGCGCAACTGCACGAGCAGGCCGACGTCTGGCTGGCACTGTTCGTCGACCCCG
AAAGCCAATTGGCAGTGCTCGAAGTGCAGGACAACGGCCCCGGCGTGTCGGCCGAGGAGCAGGCGCATCTGTTTGAGCCG
TTCTTCACTACCAGCAGCCAGGGCACCGGTCTTGGCCTTTATCTGTCCCGTGAGCTGTGCGAAAGCAACCAGGCACGCCT
AGACTTCAAATCACGCCAAGGCGGCGGCTGCTTTTGCATCACTTTTGCTCACGGACGGAAACAAAGTTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-521)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-374)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

59.623

100

0.597