Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QC632_RS22105 Genome accession   NZ_CP123897
Coordinates   5004945..5006162 (-) Length   405 a.a.
NCBI ID   WP_281021546.1    Uniprot ID   -
Organism   Methylomonas sp. UP202     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4999945..5011162
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QC632_RS22070 (QC632_22070) - 5000022..5000246 (+) 225 WP_281021539.1 sulfurtransferase TusA family protein -
  QC632_RS22075 (QC632_22075) argJ 5000292..5001506 (+) 1215 WP_281021540.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  QC632_RS22080 (QC632_22080) - 5001508..5002464 (+) 957 WP_281021541.1 Nudix family hydrolase -
  QC632_RS22085 (QC632_22085) yacG 5002449..5002652 (-) 204 WP_281021542.1 DNA gyrase inhibitor YacG -
  QC632_RS22090 (QC632_22090) zapD 5002652..5003422 (-) 771 WP_281021543.1 cell division protein ZapD -
  QC632_RS22095 (QC632_22095) coaE 5003419..5004030 (-) 612 WP_281021544.1 dephospho-CoA kinase -
  QC632_RS22100 (QC632_22100) pilD 5004030..5004896 (-) 867 WP_281021545.1 A24 family peptidase Machinery gene
  QC632_RS22105 (QC632_22105) pilC 5004945..5006162 (-) 1218 WP_281021546.1 type II secretion system F family protein Machinery gene
  QC632_RS22110 (QC632_22110) pilB 5006165..5007880 (-) 1716 WP_281021547.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QC632_RS22115 (QC632_22115) thiC 5008029..5009897 (-) 1869 WP_281021548.1 phosphomethylpyrimidine synthase ThiC -

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44214.15 Da        Isoelectric Point: 6.8759

>NTDB_id=823008 QC632_RS22105 WP_281021546.1 5004945..5006162(-) (pilC) [Methylomonas sp. UP202]
MAKQDEQIEFNWDGFDKQNKKTKGTIMAKSEVIARTELRRMGIRVVGIKRKAKPLFGAKVQKITSADIAIFARQLATMLE
AGVPLVQSFDIIGRGHDNPSMAELLLAIKADIEGGDTMAQALAKRPIYFDDLFCNLVAAGEHAGVLETLLDKIATYKEKT
ESIKKKVKKALTYPVAVLVVAFIVTAILLIFVVPVFEDLFKSFGADLPAFTQFVIALSAWVQEWWWAVLLVVGGGGYTFS
YFKKRSKAFNHFLDKSLLKIPVVGMILEKSAIARFARTLSTMSAAGVPLVEALVSVAGACGNILFHDAVMNVRDEVSTGQ
QLKVALEQTGMFPNMVVQMVAIGEESGSIDAMLDKVADFFEEEVDNLVDNLSSLMEPIIMAILGVLVGGLIVAMYLPIFK
LGAAI

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=823008 QC632_RS22105 WP_281021546.1 5004945..5006162(-) (pilC) [Methylomonas sp. UP202]
ATGGCAAAGCAAGACGAGCAAATCGAGTTCAATTGGGACGGTTTCGATAAGCAAAACAAAAAAACCAAGGGTACGATCAT
GGCCAAAAGCGAAGTGATTGCCCGAACCGAGCTGCGGCGGATGGGGATACGCGTCGTCGGCATCAAGCGCAAGGCTAAGC
CGCTATTCGGCGCCAAGGTGCAGAAAATCACCAGCGCGGATATCGCGATATTTGCCAGACAGTTGGCGACGATGTTGGAA
GCCGGCGTGCCGCTGGTGCAGTCCTTCGACATTATCGGCCGCGGCCACGACAATCCCAGCATGGCCGAGCTGTTGCTGGC
GATCAAGGCCGACATCGAAGGCGGCGACACCATGGCCCAGGCCTTGGCGAAACGGCCTATCTATTTCGACGATTTGTTCT
GCAATTTGGTCGCTGCGGGCGAGCATGCCGGGGTGTTGGAAACCTTGCTGGACAAGATTGCCACCTACAAGGAAAAAACC
GAGTCGATCAAGAAAAAGGTCAAAAAGGCACTGACCTACCCGGTCGCGGTGTTGGTGGTTGCCTTCATCGTGACCGCGAT
TTTACTGATCTTTGTCGTGCCGGTGTTCGAGGACTTGTTTAAAAGTTTCGGCGCCGACCTGCCGGCCTTCACTCAATTCG
TGATCGCTTTGTCCGCCTGGGTACAGGAATGGTGGTGGGCGGTATTGCTGGTGGTCGGCGGTGGCGGTTACACCTTCAGT
TACTTTAAAAAACGCTCGAAAGCGTTCAATCATTTTCTGGATAAGTCGTTATTAAAGATTCCGGTGGTCGGCATGATTTT
GGAAAAATCGGCGATCGCCCGTTTCGCCCGCACCCTGTCGACGATGTCGGCGGCCGGCGTGCCGCTGGTAGAGGCCTTGG
TGTCGGTCGCGGGCGCTTGCGGCAACATTCTGTTTCACGATGCGGTAATGAACGTCCGCGACGAAGTATCCACCGGTCAG
CAGTTGAAGGTGGCATTGGAACAAACCGGCATGTTTCCGAATATGGTGGTGCAAATGGTTGCCATCGGCGAGGAATCCGG
TTCTATCGACGCGATGTTGGATAAGGTGGCGGATTTCTTCGAAGAAGAGGTGGACAATCTGGTCGACAATCTCAGTAGCC
TGATGGAGCCGATTATCATGGCCATCTTGGGCGTGTTGGTCGGCGGCCTGATCGTCGCAATGTATTTGCCCATCTTCAAG
CTCGGCGCCGCGATATAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Legionella pneumophila strain ERS1305867

59.296

98.272

0.583
  pilC Pseudomonas stutzeri DSM 10701

56.313

97.778

0.551
  pilC Acinetobacter baumannii D1279779

54.156

98.025

0.531
  pilC Acinetobacter baylyi ADP1

51.961

100

0.523
  pilG Neisseria gonorrhoeae MS11

46.173

100

0.462
  pilG Neisseria meningitidis 44/76-A

47.545

95.556

0.454
  pilC Vibrio cholerae strain A1552

40.759

97.531

0.398
  pilC Vibrio campbellii strain DS40M4

39.85

98.519

0.393
  pilC Thermus thermophilus HB27

36.935

98.272

0.363