Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QC632_RS22100 Genome accession   NZ_CP123897
Coordinates   5004030..5004896 (-) Length   288 a.a.
NCBI ID   WP_281021545.1    Uniprot ID   -
Organism   Methylomonas sp. UP202     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4999030..5009896
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QC632_RS22070 (QC632_22070) - 5000022..5000246 (+) 225 WP_281021539.1 sulfurtransferase TusA family protein -
  QC632_RS22075 (QC632_22075) argJ 5000292..5001506 (+) 1215 WP_281021540.1 bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ -
  QC632_RS22080 (QC632_22080) - 5001508..5002464 (+) 957 WP_281021541.1 Nudix family hydrolase -
  QC632_RS22085 (QC632_22085) yacG 5002449..5002652 (-) 204 WP_281021542.1 DNA gyrase inhibitor YacG -
  QC632_RS22090 (QC632_22090) zapD 5002652..5003422 (-) 771 WP_281021543.1 cell division protein ZapD -
  QC632_RS22095 (QC632_22095) coaE 5003419..5004030 (-) 612 WP_281021544.1 dephospho-CoA kinase -
  QC632_RS22100 (QC632_22100) pilD 5004030..5004896 (-) 867 WP_281021545.1 A24 family peptidase Machinery gene
  QC632_RS22105 (QC632_22105) pilC 5004945..5006162 (-) 1218 WP_281021546.1 type II secretion system F family protein Machinery gene
  QC632_RS22110 (QC632_22110) pilB 5006165..5007880 (-) 1716 WP_281021547.1 type IV-A pilus assembly ATPase PilB Machinery gene

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31765.80 Da        Isoelectric Point: 6.9208

>NTDB_id=823007 QC632_RS22100 WP_281021545.1 5004030..5004896(-) (pilD) [Methylomonas sp. UP202]
MLTLLEQFPPLLMGVALLLGLLVGSFLNVVIYRLPVMLQRDWRRDCHEFLQLPYSESAEVFNLMWPASHCPACNAPIKAY
QNIPVLSYLLLAGRCAHCGTAIAWRYPLVEALTGLCSALVAWKLGFGLGLAFGLLLTWSLIALSFIDFDHQLLPDCITLP
MLWLGLLLSLFGVYAEPRDAIIGAAAGYLALWSVYQGFKLLTGKEGMGFGDFKLLALLGAWFGWQYLPQIVLLSSLLGAL
VGVTMIATGRREASKPIPFGPYLAAAGWIAMLWGDDINRWYLHFAGLN

Nucleotide


Download         Length: 867 bp        

>NTDB_id=823007 QC632_RS22100 WP_281021545.1 5004030..5004896(-) (pilD) [Methylomonas sp. UP202]
ATGCTGACGTTGTTGGAACAATTTCCGCCGCTACTGATGGGTGTGGCGCTGCTGCTAGGTCTGCTGGTCGGCAGCTTCTT
GAATGTGGTGATTTACCGGTTGCCGGTAATGCTGCAACGCGATTGGCGGCGCGATTGTCACGAGTTTTTGCAACTGCCGT
ATTCGGAGTCCGCCGAGGTCTTCAATCTGATGTGGCCGGCTTCGCACTGTCCGGCCTGTAACGCGCCGATCAAGGCCTAT
CAAAACATTCCGGTGCTGAGCTATTTGTTGTTGGCCGGCCGGTGCGCGCACTGTGGCACCGCGATCGCTTGGCGCTATCC
ACTGGTCGAGGCGTTAACCGGATTGTGTTCCGCGCTGGTGGCCTGGAAGTTGGGCTTCGGGCTGGGGTTGGCATTTGGCT
TGCTGCTGACCTGGAGCTTGATTGCGTTGAGTTTCATTGATTTCGACCATCAATTGTTGCCCGACTGCATCACTTTGCCG
ATGTTGTGGCTGGGTTTGTTGCTGAGTTTGTTCGGTGTCTATGCCGAACCGCGCGATGCGATCATCGGCGCGGCGGCCGG
CTATTTGGCGCTGTGGAGCGTTTATCAGGGCTTCAAACTGCTGACCGGCAAGGAAGGGATGGGCTTCGGCGATTTCAAGT
TATTGGCCCTACTTGGCGCCTGGTTCGGTTGGCAGTATCTGCCGCAGATTGTGTTGCTGTCGTCGCTGTTGGGCGCGTTG
GTCGGCGTCACGATGATCGCGACCGGGCGGCGTGAAGCGTCCAAGCCGATTCCGTTCGGGCCTTATCTGGCGGCGGCCGG
TTGGATCGCCATGCTGTGGGGCGACGACATCAACCGCTGGTATCTGCATTTTGCCGGATTGAATTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(18-123)

Type IV leader peptidase family (Peptidase_A24)

(135-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Acinetobacter baumannii D1279779

52.857

97.222

0.514
  pilD Acinetobacter nosocomialis M2

52.5

97.222

0.51
  pilD Vibrio cholerae strain A1552

51.625

96.181

0.497
  pilD Neisseria gonorrhoeae MS11

49.474

98.958

0.49
  pilD Vibrio campbellii strain DS40M4

49.117

98.264

0.483