Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   QFF56_RS00045 Genome accession   NZ_CP123751
Coordinates   10314..10868 (+) Length   184 a.a.
NCBI ID   WP_010690103.1    Uniprot ID   -
Organism   Ligilactobacillus animalis strain ZSB1     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 5314..15868
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QFF56_RS00030 (QFF56_00030) gyrA 6450..8912 (+) 2463 WP_035447011.1 DNA gyrase subunit A -
  QFF56_RS00035 (QFF56_00035) - 9011..9646 (-) 636 WP_283534689.1 NAD(P)-dependent oxidoreductase -
  QFF56_RS00040 (QFF56_00040) rpsF 9987..10277 (+) 291 WP_004049701.1 30S ribosomal protein S6 -
  QFF56_RS00045 (QFF56_00045) ssb 10314..10868 (+) 555 WP_010690103.1 single-stranded DNA-binding protein Machinery gene
  QFF56_RS00050 (QFF56_00050) rpsR 10890..11126 (+) 237 WP_003695889.1 30S ribosomal protein S18 -
  QFF56_RS00055 (QFF56_00055) - 11684..12010 (-) 327 WP_036687233.1 hypothetical protein -
  QFF56_RS00060 (QFF56_00060) - 12375..12581 (+) 207 WP_010690109.1 hypothetical protein -
  QFF56_RS00065 (QFF56_00065) - 12658..13641 (-) 984 WP_035447000.1 DUF1002 domain-containing protein -
  QFF56_RS00070 (QFF56_00070) pnuC 13920..14690 (+) 771 WP_035446998.1 nicotinamide riboside transporter PnuC -

Sequence

Protein


Download         Length: 184 a.a.        Molecular weight: 20145.85 Da        Isoelectric Point: 4.6382

>NTDB_id=822479 QFF56_RS00045 WP_010690103.1 10314..10868(+) (ssb) [Ligilactobacillus animalis strain ZSB1]
MINSVVLVGRLTRDPELRYTPSGAAVASFTVAIDRRFTNQQGQREADFINCVMWRKAAENFANFTHKGSLVGIEGRIQTR
SYENQQGQRVYVTEVLAENFSLLESKAESERYRAQHGNSNANVQGSAPSNDMQSSNPFGTPANNQTNDAFGGNGFDTNTN
NSNNAADPFAGGQQIDISDDDLPF

Nucleotide


Download         Length: 555 bp        

>NTDB_id=822479 QFF56_RS00045 WP_010690103.1 10314..10868(+) (ssb) [Ligilactobacillus animalis strain ZSB1]
TTGATCAATTCAGTTGTTCTAGTAGGTCGTTTGACCCGAGATCCTGAACTGCGCTACACGCCTTCAGGGGCAGCCGTGGC
AAGCTTTACTGTCGCGATCGACCGTCGTTTCACTAACCAACAAGGTCAACGTGAAGCTGATTTCATCAATTGCGTAATGT
GGCGTAAAGCAGCCGAAAACTTTGCTAACTTTACCCACAAAGGTTCCTTAGTTGGGATCGAAGGACGGATCCAAACCCGT
TCTTATGAAAATCAGCAAGGTCAACGTGTTTATGTTACTGAAGTTTTAGCTGAGAATTTCTCACTTTTGGAATCCAAGGC
TGAATCAGAAAGGTATCGTGCCCAACACGGCAACAGTAACGCTAATGTGCAAGGTTCAGCTCCTTCAAATGATATGCAGT
CATCTAATCCATTTGGGACTCCAGCAAATAATCAGACCAATGATGCTTTTGGTGGTAATGGTTTTGATACCAATACAAAC
AATAGTAACAATGCTGCTGATCCATTTGCCGGTGGTCAACAGATCGATATCTCAGATGATGACTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.081

100

0.614
  ssbA Bacillus subtilis subsp. subtilis str. 168

57.219

100

0.582