Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   QAO43_RS14580 Genome accession   NZ_CP123082
Coordinates   2895966..2896391 (+) Length   141 a.a.
NCBI ID   WP_000934384.1    Uniprot ID   -
Organism   Staphylococcus aureus strain SW-MRSA58     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 2888321..2905418 2895966..2896391 within 0


Gene organization within MGE regions


Location: 2888321..2905418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QAO43_RS14500 (QAO43_14535) - 2888321..2889706 (-) 1386 WP_000861313.1 recombinase family protein -
  QAO43_RS14505 (QAO43_14540) - 2889913..2890593 (-) 681 WP_000392109.1 type II toxin-antitoxin system PemK/MazF family toxin -
  QAO43_RS14510 (QAO43_14545) - 2890625..2891089 (-) 465 WP_000525007.1 hypothetical protein -
  QAO43_RS14515 (QAO43_14550) - 2891102..2891425 (-) 324 WP_001260487.1 helix-turn-helix domain-containing protein -
  QAO43_RS14520 (QAO43_14555) - 2891589..2891837 (+) 249 WP_000272859.1 helix-turn-helix domain-containing protein -
  QAO43_RS14525 (QAO43_14560) - 2891850..2892293 (+) 444 WP_023487065.1 hypothetical protein -
  QAO43_RS14530 (QAO43_14565) - 2892308..2892451 (+) 144 WP_000939498.1 hypothetical protein -
  QAO43_RS14535 (QAO43_14570) - 2892441..2892650 (-) 210 WP_000642492.1 hypothetical protein -
  QAO43_RS14540 (QAO43_14575) - 2893090..2893275 (+) 186 WP_000933363.1 helix-turn-helix domain-containing protein -
  QAO43_RS14545 (QAO43_14580) - 2893277..2894029 (+) 753 WP_023487064.1 phage antirepressor KilAC domain-containing protein -
  QAO43_RS14550 (QAO43_14585) - 2894196..2894426 (-) 231 WP_000395455.1 hypothetical protein -
  QAO43_RS14555 (QAO43_14590) - 2894476..2894613 (+) 138 WP_000230552.1 hypothetical protein -
  QAO43_RS14560 (QAO43_14595) - 2894606..2894767 (+) 162 WP_001668917.1 DUF1270 family protein -
  QAO43_RS14565 (QAO43_14600) - 2894859..2895119 (+) 261 WP_000291076.1 DUF1108 family protein -
  QAO43_RS14570 (QAO43_14605) - 2895129..2895350 (+) 222 WP_000815403.1 DUF2483 family protein -
  QAO43_RS14575 (QAO43_14610) - 2895343..2895966 (+) 624 WP_000139720.1 DUF1071 domain-containing protein -
  QAO43_RS14580 (QAO43_14615) ssbA 2895966..2896391 (+) 426 WP_000934384.1 single-stranded DNA-binding protein Machinery gene
  QAO43_RS14585 (QAO43_14620) - 2896402..2896953 (+) 552 WP_001004506.1 NUMOD4 domain-containing protein -
  QAO43_RS14590 (QAO43_14625) - 2896954..2897628 (+) 675 WP_015445893.1 putative HNHc nuclease -
  QAO43_RS14595 (QAO43_14630) - 2897621..2898376 (+) 756 WP_001037657.1 DnaD domain protein -
  QAO43_RS14600 (QAO43_14635) - 2898376..2898732 (+) 357 WP_001132243.1 hypothetical protein -
  QAO43_RS14605 (QAO43_14640) - 2898729..2899970 (+) 1242 WP_015445891.1 DnaB helicase C-terminal domain-containing protein -
  QAO43_RS14610 (QAO43_14645) - 2899967..2900182 (+) 216 WP_001024405.1 hypothetical protein -
  QAO43_RS14615 (QAO43_14650) - 2900186..2900407 (+) 222 WP_001123688.1 DUF3269 family protein -
  QAO43_RS14620 (QAO43_14655) - 2900417..2900842 (+) 426 WP_000451861.1 phage N-6-adenine-methyltransferase -
  QAO43_RS14625 (QAO43_14660) - 2900839..2901243 (+) 405 WP_031895320.1 DUF1064 domain-containing protein -
  QAO43_RS14630 (QAO43_14665) - 2901248..2901433 (+) 186 WP_001187230.1 DUF3113 family protein -
  QAO43_RS14635 (QAO43_14670) - 2901519..2901773 (+) 255 WP_000022735.1 DUF3310 domain-containing protein -
  QAO43_RS14640 (QAO43_14675) - 2901773..2902021 (+) 249 WP_012068339.1 SAV1978 family virulence-associated passenger protein -
  QAO43_RS14645 (QAO43_14680) - 2902034..2902435 (+) 402 WP_000695762.1 hypothetical protein -
  QAO43_RS14650 (QAO43_14685) - 2902432..2902779 (+) 348 WP_000979209.1 YopX family protein -
  QAO43_RS14655 (QAO43_14690) - 2902776..2903084 (+) 309 WP_000144710.1 hypothetical protein -
  QAO43_RS14660 (QAO43_14695) - 2903077..2903325 (+) 249 WP_031895328.1 DUF1024 family protein -
  QAO43_RS14665 (QAO43_14700) - 2903318..2903854 (+) 537 WP_000185680.1 dUTPase -
  QAO43_RS14670 (QAO43_14705) - 2903891..2904097 (+) 207 WP_000195820.1 DUF1381 domain-containing protein -
  QAO43_RS14675 (QAO43_14710) rinB 2904094..2904243 (+) 150 Protein_2855 transcriptional activator RinB -
  QAO43_RS14680 (QAO43_14715) - 2904243..2904443 (+) 201 WP_000265041.1 DUF1514 family protein -
  QAO43_RS14685 (QAO43_14720) - 2904471..2904887 (+) 417 WP_000590126.1 hypothetical protein -
  QAO43_RS14690 (QAO43_14725) - 2905119..2905418 (+) 300 WP_000988336.1 HNH endonuclease -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15784.48 Da        Isoelectric Point: 8.4826

>NTDB_id=818366 QAO43_RS14580 WP_000934384.1 2895966..2896391(+) (ssbA) [Staphylococcus aureus strain SW-MRSA58]
MLNRAVLVGRLTKDPELRSAPNGVNVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
SYENKVGQRVFVTEVVADSVQFLEPKNNNQQPNNNYHQQRQTQTGNNPFDNNADSIEDLPF

Nucleotide


Download         Length: 426 bp        

>NTDB_id=818366 QAO43_RS14580 WP_000934384.1 2895966..2896391(+) (ssbA) [Staphylococcus aureus strain SW-MRSA58]
ATGTTAAACAGAGCAGTATTAGTAGGACGCTTAACAAAAGACCCAGAATTAAGAAGCGCGCCAAATGGCGTAAATGTAGG
TACATTCACATTGGCAGTAAACAGAACATTCACGAATGCTCAAGGCGAGCGTGAAGCAGATTTTATAAACGTAGTAGTGT
TCAAGAAACAAGCTGAAAATGTTAAAAACTACCTTTCTAAAGGGTCGCTGGCAGGTGTAGACGGGCGATTACAAACACGT
AGCTACGAAAATAAAGTCGGGCAACGTGTATTTGTGACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAACAACGCAG
ACTCTATAGAGGATCTTCCTTTTTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

73.729

83.688

0.617
  ssb Latilactobacillus sakei subsp. sakei 23K

50

100

0.603
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.491

75.177

0.44
  ssbB Streptococcus sobrinus strain NIDR 6715-7

41.844

100

0.418
  ssbA Streptococcus mutans UA159

46.087

81.56

0.376
  ssbB/cilA Streptococcus mitis NCTC 12261

44.915

83.688

0.376
  ssbB/cilA Streptococcus pneumoniae TIGR4

44.915

83.688

0.376
  ssbB/cilA Streptococcus pneumoniae Rx1

44.068

83.688

0.369
  ssbB/cilA Streptococcus pneumoniae D39

44.068

83.688

0.369
  ssbB/cilA Streptococcus pneumoniae R6

44.068

83.688

0.369
  ssbB/cilA Streptococcus mitis SK321

44.068

83.688

0.369