Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | QAY63_RS14605 | Genome accession | NZ_CP123080 |
| Coordinates | 2901316..2901741 (+) | Length | 141 a.a. |
| NCBI ID | WP_000934384.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain SW-MRSA59 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2876993..2910768 | 2901316..2901741 | within | 0 |
Gene organization within MGE regions
Location: 2876993..2910768
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QAY63_RS14445 (QAY63_14470) | - | 2876993..2877619 (-) | 627 | WP_000522381.1 | nitroreductase family protein | - |
| QAY63_RS14450 (QAY63_14475) | - | 2877816..2879024 (+) | 1209 | WP_015445895.1 | SdrH family protein | - |
| QAY63_RS14455 (QAY63_14480) | mroQ | 2879049..2879792 (-) | 744 | WP_000197635.1 | CPBP family intramembrane glutamic endopeptidase MroQ | - |
| QAY63_RS14460 (QAY63_14485) | groES | 2879967..2880251 (+) | 285 | WP_000917289.1 | co-chaperone GroES | - |
| QAY63_RS14465 (QAY63_14490) | groL | 2880327..2881943 (+) | 1617 | WP_000240642.1 | chaperonin GroEL | - |
| QAY63_RS14470 (QAY63_14495) | - | 2882606..2883925 (+) | 1320 | WP_001557163.1 | ISL3-like element IS1181 family transposase | - |
| QAY63_RS14475 (QAY63_14505) | - | 2884003..2885310 (-) | 1308 | WP_001045079.1 | TrkH family potassium uptake protein | - |
| QAY63_RS14480 (QAY63_14510) | - | 2885754..2886977 (-) | 1224 | WP_000206625.1 | ArgE/DapE family deacylase | - |
| QAY63_RS14485 (QAY63_14515) | - | 2887316..2888488 (+) | 1173 | WP_000195429.1 | IS256-like element IS256 family transposase | - |
| QAY63_RS14490 (QAY63_14520) | lukH | 2888745..2889800 (+) | 1056 | WP_000791411.1 | bi-component leukocidin LukGH subunit H | - |
| QAY63_RS14495 (QAY63_14525) | lukG | 2889822..2890838 (+) | 1017 | WP_000595392.1 | bi-component leukocidin LukGH subunit G | - |
| QAY63_RS14500 (QAY63_14530) | sph | 2891076..2891900 (-) | 825 | Protein_2820 | sphingomyelin phosphodiesterase | - |
| QAY63_RS14505 (QAY63_14535) | - | 2891957..2892994 (-) | 1038 | WP_000857198.1 | tyrosine-type recombinase/integrase | - |
| QAY63_RS14510 (QAY63_14540) | - | 2893167..2893706 (-) | 540 | WP_000391618.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| QAY63_RS14515 (QAY63_14545) | - | 2893846..2894013 (-) | 168 | WP_000705238.1 | hypothetical protein | - |
| QAY63_RS14520 (QAY63_14550) | - | 2894213..2894398 (-) | 186 | WP_000100503.1 | hypothetical protein | - |
| QAY63_RS14525 (QAY63_14555) | - | 2894395..2894541 (-) | 147 | WP_000345949.1 | hypothetical protein | - |
| QAY63_RS14530 (QAY63_14560) | - | 2894615..2895469 (-) | 855 | WP_001557601.1 | HIRAN domain-containing protein | - |
| QAY63_RS14535 (QAY63_14565) | - | 2895481..2896197 (-) | 717 | WP_001083975.1 | LexA family transcriptional regulator | - |
| QAY63_RS14540 (QAY63_14570) | - | 2896361..2896603 (+) | 243 | WP_000639923.1 | DUF739 family protein | - |
| QAY63_RS14545 (QAY63_14575) | - | 2896616..2896876 (+) | 261 | WP_000435341.1 | transcriptional regulator | - |
| QAY63_RS14550 (QAY63_14580) | - | 2896900..2897438 (-) | 539 | Protein_2830 | hypothetical protein | - |
| QAY63_RS14555 (QAY63_14585) | - | 2897495..2898250 (+) | 756 | WP_001148341.1 | phage antirepressor KilAC domain-containing protein | - |
| QAY63_RS14560 (QAY63_14590) | - | 2898267..2898407 (+) | 141 | WP_000939500.1 | hypothetical protein | - |
| QAY63_RS14565 (QAY63_14595) | - | 2898422..2899054 (-) | 633 | WP_001814660.1 | hypothetical protein | - |
| QAY63_RS14570 (QAY63_14600) | - | 2899110..2899436 (+) | 327 | WP_001025595.1 | hypothetical protein | - |
| QAY63_RS14575 (QAY63_14605) | - | 2899433..2899532 (+) | 100 | Protein_2835 | hypothetical protein | - |
| QAY63_RS14580 (QAY63_14610) | - | 2899681..2899944 (+) | 264 | WP_001124198.1 | helix-turn-helix domain-containing protein | - |
| QAY63_RS14585 (QAY63_14615) | - | 2899956..2900117 (+) | 162 | WP_000066021.1 | DUF1270 family protein | - |
| QAY63_RS14590 (QAY63_14620) | - | 2900209..2900469 (+) | 261 | WP_000291076.1 | DUF1108 family protein | - |
| QAY63_RS14595 (QAY63_14625) | - | 2900479..2900700 (+) | 222 | WP_000815403.1 | DUF2483 family protein | - |
| QAY63_RS14600 (QAY63_14630) | - | 2900693..2901316 (+) | 624 | WP_000139720.1 | DUF1071 domain-containing protein | - |
| QAY63_RS14605 (QAY63_14635) | ssbA | 2901316..2901741 (+) | 426 | WP_000934384.1 | single-stranded DNA-binding protein | Machinery gene |
| QAY63_RS14610 (QAY63_14640) | - | 2901752..2902303 (+) | 552 | WP_001004506.1 | NUMOD4 domain-containing protein | - |
| QAY63_RS14615 (QAY63_14645) | - | 2902304..2902978 (+) | 675 | WP_015445893.1 | putative HNHc nuclease | - |
| QAY63_RS14620 (QAY63_14650) | - | 2902971..2903726 (+) | 756 | WP_001037657.1 | DnaD domain protein | - |
| QAY63_RS14625 (QAY63_14655) | - | 2903726..2904082 (+) | 357 | WP_001132243.1 | hypothetical protein | - |
| QAY63_RS14630 (QAY63_14660) | - | 2904079..2905320 (+) | 1242 | WP_015445891.1 | DnaB helicase C-terminal domain-containing protein | - |
| QAY63_RS14635 (QAY63_14665) | - | 2905317..2905532 (+) | 216 | WP_001024405.1 | hypothetical protein | - |
| QAY63_RS14640 (QAY63_14670) | - | 2905536..2905757 (+) | 222 | WP_001123688.1 | DUF3269 family protein | - |
| QAY63_RS14645 (QAY63_14675) | - | 2905767..2906192 (+) | 426 | WP_000451861.1 | phage N-6-adenine-methyltransferase | - |
| QAY63_RS14650 (QAY63_14680) | - | 2906189..2906593 (+) | 405 | WP_031895320.1 | DUF1064 domain-containing protein | - |
| QAY63_RS14655 (QAY63_14685) | - | 2906598..2906783 (+) | 186 | WP_001187230.1 | DUF3113 family protein | - |
| QAY63_RS14660 (QAY63_14690) | - | 2906869..2907123 (+) | 255 | WP_000022735.1 | DUF3310 domain-containing protein | - |
| QAY63_RS14665 (QAY63_14695) | - | 2907123..2907371 (+) | 249 | WP_012068339.1 | SAV1978 family virulence-associated passenger protein | - |
| QAY63_RS14670 (QAY63_14700) | - | 2907384..2907785 (+) | 402 | WP_000695762.1 | hypothetical protein | - |
| QAY63_RS14675 (QAY63_14705) | - | 2907782..2908129 (+) | 348 | WP_000979209.1 | YopX family protein | - |
| QAY63_RS14680 (QAY63_14710) | - | 2908126..2908434 (+) | 309 | WP_033861396.1 | hypothetical protein | - |
| QAY63_RS14685 (QAY63_14715) | - | 2908427..2908675 (+) | 249 | WP_031895328.1 | DUF1024 family protein | - |
| QAY63_RS14690 (QAY63_14720) | - | 2908668..2909204 (+) | 537 | WP_000185680.1 | dUTPase | - |
| QAY63_RS14695 (QAY63_14725) | - | 2909241..2909447 (+) | 207 | WP_000195820.1 | DUF1381 domain-containing protein | - |
| QAY63_RS14700 (QAY63_14730) | rinB | 2909444..2909593 (+) | 150 | Protein_2860 | transcriptional activator RinB | - |
| QAY63_RS14705 (QAY63_14735) | - | 2909593..2909793 (+) | 201 | WP_000265041.1 | DUF1514 family protein | - |
| QAY63_RS14710 (QAY63_14740) | - | 2909821..2910237 (+) | 417 | WP_000590126.1 | hypothetical protein | - |
| QAY63_RS14715 (QAY63_14745) | - | 2910469..2910768 (+) | 300 | WP_000988336.1 | HNH endonuclease | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 15784.48 Da Isoelectric Point: 8.4826
>NTDB_id=818323 QAY63_RS14605 WP_000934384.1 2901316..2901741(+) (ssbA) [Staphylococcus aureus strain SW-MRSA59]
MLNRAVLVGRLTKDPELRSAPNGVNVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
SYENKVGQRVFVTEVVADSVQFLEPKNNNQQPNNNYHQQRQTQTGNNPFDNNADSIEDLPF
MLNRAVLVGRLTKDPELRSAPNGVNVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
SYENKVGQRVFVTEVVADSVQFLEPKNNNQQPNNNYHQQRQTQTGNNPFDNNADSIEDLPF
Nucleotide
Download Length: 426 bp
>NTDB_id=818323 QAY63_RS14605 WP_000934384.1 2901316..2901741(+) (ssbA) [Staphylococcus aureus strain SW-MRSA59]
ATGTTAAACAGAGCAGTATTAGTAGGACGCTTAACAAAAGACCCAGAATTAAGAAGCGCGCCAAATGGCGTAAATGTAGG
TACATTCACATTGGCAGTAAACAGAACATTCACGAATGCTCAAGGCGAGCGTGAAGCAGATTTTATAAACGTAGTAGTGT
TCAAGAAACAAGCTGAAAATGTTAAAAACTACCTTTCTAAAGGGTCGCTGGCAGGTGTAGACGGGCGATTACAAACACGT
AGCTACGAAAATAAAGTCGGGCAACGTGTATTTGTGACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAACAACGCAG
ACTCTATAGAGGATCTTCCTTTTTAG
ATGTTAAACAGAGCAGTATTAGTAGGACGCTTAACAAAAGACCCAGAATTAAGAAGCGCGCCAAATGGCGTAAATGTAGG
TACATTCACATTGGCAGTAAACAGAACATTCACGAATGCTCAAGGCGAGCGTGAAGCAGATTTTATAAACGTAGTAGTGT
TCAAGAAACAAGCTGAAAATGTTAAAAACTACCTTTCTAAAGGGTCGCTGGCAGGTGTAGACGGGCGATTACAAACACGT
AGCTACGAAAATAAAGTCGGGCAACGTGTATTTGTGACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAACAACGCAG
ACTCTATAGAGGATCTTCCTTTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
73.729 |
83.688 |
0.617 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50 |
100 |
0.603 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
75.177 |
0.44 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
41.844 |
100 |
0.418 |
| ssbA | Streptococcus mutans UA159 |
46.087 |
81.56 |
0.376 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
44.915 |
83.688 |
0.376 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
44.915 |
83.688 |
0.376 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
44.068 |
83.688 |
0.369 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
44.068 |
83.688 |
0.369 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
44.068 |
83.688 |
0.369 |
| ssbB/cilA | Streptococcus mitis SK321 |
44.068 |
83.688 |
0.369 |