Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | QAO35_RS14345 | Genome accession | NZ_CP123074 |
| Coordinates | 2848333..2848758 (-) | Length | 141 a.a. |
| NCBI ID | WP_015978401.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain SW-MRSA61 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2810525..2855681 | 2848333..2848758 | within | 0 |
Gene organization within MGE regions
Location: 2810525..2855681
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QAO35_RS14080 (QAO35_14115) | - | 2810525..2811967 (-) | 1443 | WP_031870354.1 | Mu transposase C-terminal domain-containing protein | - |
| QAO35_RS14085 (QAO35_14120) | - | 2811939..2812532 (-) | 594 | WP_000690628.1 | recombinase family protein | - |
| QAO35_RS14090 (QAO35_14125) | - | 2812738..2813280 (+) | 543 | WP_411888865.1 | TetR/AcrR family transcriptional regulator | - |
| QAO35_RS14095 (QAO35_14130) | - | 2813908..2815353 (-) | 1446 | WP_001148121.1 | SH3 domain-containing protein | - |
| QAO35_RS14100 (QAO35_14135) | - | 2815334..2815771 (-) | 438 | WP_031807125.1 | phage holin | - |
| QAO35_RS14105 (QAO35_14140) | - | 2815826..2816221 (-) | 396 | WP_000387943.1 | hypothetical protein | - |
| QAO35_RS14110 (QAO35_14145) | - | 2816226..2817464 (-) | 1239 | WP_000276650.1 | BppU family phage baseplate upper protein | - |
| QAO35_RS14115 (QAO35_14150) | - | 2817477..2819381 (-) | 1905 | WP_031895302.1 | glucosaminidase domain-containing protein | - |
| QAO35_RS14120 (QAO35_14155) | - | 2819518..2819817 (-) | 300 | WP_000466769.1 | DUF2951 domain-containing protein | - |
| QAO35_RS14125 (QAO35_14160) | - | 2819858..2820031 (-) | 174 | WP_001790193.1 | XkdX family protein | - |
| QAO35_RS14130 (QAO35_14165) | - | 2820035..2820412 (-) | 378 | WP_000705893.1 | DUF2977 domain-containing protein | - |
| QAO35_RS14135 (QAO35_14170) | - | 2820412..2822235 (-) | 1824 | WP_411907243.1 | phage baseplate upper protein | - |
| QAO35_RS14140 (QAO35_14175) | - | 2822235..2824145 (-) | 1911 | WP_411888867.1 | hypothetical protein | - |
| QAO35_RS14145 (QAO35_14180) | - | 2824160..2826061 (-) | 1902 | WP_009560293.1 | SGNH/GDSL hydrolase family protein | - |
| QAO35_RS14150 (QAO35_14185) | - | 2826070..2827017 (-) | 948 | WP_000350680.1 | phage tail family protein | - |
| QAO35_RS14155 (QAO35_14190) | - | 2827030..2830494 (-) | 3465 | WP_411888868.1 | hypothetical protein | - |
| QAO35_RS14160 (QAO35_14195) | - | 2830511..2830855 (-) | 345 | WP_000105584.1 | hypothetical protein | - |
| QAO35_RS14165 (QAO35_14200) | - | 2830885..2831250 (-) | 366 | WP_001100163.1 | tail assembly chaperone | - |
| QAO35_RS14170 (QAO35_14205) | - | 2831312..2831893 (-) | 582 | WP_000002583.1 | phage major tail protein, TP901-1 family | - |
| QAO35_RS14175 (QAO35_14210) | - | 2831912..2832295 (-) | 384 | WP_000188653.1 | hypothetical protein | - |
| QAO35_RS14180 (QAO35_14215) | - | 2832307..2832654 (-) | 348 | WP_001017811.1 | HK97-gp10 family putative phage morphogenesis protein | - |
| QAO35_RS14185 (QAO35_14220) | - | 2832654..2832956 (-) | 303 | WP_001268304.1 | hypothetical protein | - |
| QAO35_RS14190 (QAO35_14225) | - | 2832953..2833285 (-) | 333 | WP_000208960.1 | phage head-tail connector protein | - |
| QAO35_RS14195 (QAO35_14230) | - | 2833294..2833581 (-) | 288 | WP_001114086.1 | hypothetical protein | - |
| QAO35_RS14200 (QAO35_14235) | - | 2833603..2834577 (-) | 975 | WP_000438495.1 | phage major capsid protein | - |
| QAO35_RS14205 (QAO35_14240) | - | 2834591..2835205 (-) | 615 | WP_009560326.1 | DUF4355 domain-containing protein | - |
| QAO35_RS14210 (QAO35_14245) | - | 2835340..2835510 (-) | 171 | WP_000072207.1 | hypothetical protein | - |
| QAO35_RS14215 (QAO35_14250) | - | 2835583..2836578 (-) | 996 | WP_001133043.1 | minor capsid protein | - |
| QAO35_RS14220 (QAO35_14255) | - | 2836585..2838120 (-) | 1536 | WP_000921892.1 | phage portal protein | - |
| QAO35_RS14225 (QAO35_14260) | - | 2838131..2839426 (-) | 1296 | WP_031895294.1 | PBSX family phage terminase large subunit | - |
| QAO35_RS14230 (QAO35_14265) | - | 2839429..2839923 (-) | 495 | WP_001004406.1 | terminase small subunit | - |
| QAO35_RS14235 (QAO35_14270) | - | 2840110..2840529 (-) | 420 | WP_000058633.1 | transcriptional regulator | - |
| QAO35_RS14240 (QAO35_14275) | - | 2840544..2840690 (-) | 147 | WP_000989997.1 | hypothetical protein | - |
| QAO35_RS14245 (QAO35_14280) | rinB | 2840691..2840864 (-) | 174 | WP_031895293.1 | transcriptional activator RinB | - |
| QAO35_RS14250 (QAO35_14285) | - | 2840857..2841060 (-) | 204 | WP_001072794.1 | hypothetical protein | - |
| QAO35_RS14255 (QAO35_14290) | - | 2841057..2841251 (-) | 195 | WP_000132920.1 | hypothetical protein | - |
| QAO35_RS14260 (QAO35_14295) | - | 2841248..2841454 (-) | 207 | WP_000195785.1 | DUF1381 domain-containing protein | - |
| QAO35_RS14265 (QAO35_14300) | - | 2841491..2842021 (-) | 531 | WP_000185651.1 | dUTP diphosphatase | - |
| QAO35_RS14270 (QAO35_14305) | - | 2842014..2842196 (-) | 183 | WP_000028421.1 | hypothetical protein | - |
| QAO35_RS14275 (QAO35_14310) | - | 2842186..2842437 (-) | 252 | WP_031766094.1 | DUF1024 family protein | - |
| QAO35_RS14280 (QAO35_14315) | - | 2842430..2842714 (-) | 285 | WP_001105618.1 | hypothetical protein | - |
| QAO35_RS14285 (QAO35_14320) | - | 2842711..2843112 (-) | 402 | WP_411888869.1 | hypothetical protein | - |
| QAO35_RS14290 (QAO35_14325) | - | 2843125..2843373 (-) | 249 | WP_411888870.1 | phi PVL orf 51-like protein | - |
| QAO35_RS14295 (QAO35_14330) | - | 2843374..2843733 (-) | 360 | WP_031895324.1 | SA1788 family PVL leukocidin-associated protein | - |
| QAO35_RS14300 (QAO35_14335) | - | 2843734..2843919 (-) | 186 | WP_001187264.1 | DUF3113 family protein | - |
| QAO35_RS14305 (QAO35_14340) | - | 2843919..2844326 (-) | 408 | WP_000401950.1 | RusA family crossover junction endodeoxyribonuclease | - |
| QAO35_RS14310 (QAO35_14345) | - | 2844336..2844557 (-) | 222 | WP_001123688.1 | DUF3269 family protein | - |
| QAO35_RS14315 (QAO35_14350) | - | 2844570..2844728 (-) | 159 | WP_000256596.1 | hypothetical protein | - |
| QAO35_RS14320 (QAO35_14355) | - | 2844722..2845501 (-) | 780 | WP_000803062.1 | ATP-binding protein | - |
| QAO35_RS14325 (QAO35_14360) | - | 2845511..2846281 (-) | 771 | WP_000190223.1 | conserved phage C-terminal domain-containing protein | - |
| QAO35_RS14330 (QAO35_14365) | - | 2846327..2846986 (+) | 660 | WP_016028252.1 | hypothetical protein | - |
| QAO35_RS14335 (QAO35_14370) | - | 2847096..2847770 (-) | 675 | WP_411888871.1 | putative HNHc nuclease | - |
| QAO35_RS14340 (QAO35_14375) | - | 2847771..2848322 (-) | 552 | WP_031927924.1 | NUMOD4 domain-containing protein | - |
| QAO35_RS14345 (QAO35_14380) | ssbA | 2848333..2848758 (-) | 426 | WP_015978401.1 | single-stranded DNA-binding protein | Machinery gene |
| QAO35_RS14350 (QAO35_14385) | - | 2848758..2849381 (-) | 624 | WP_000139720.1 | DUF1071 domain-containing protein | - |
| QAO35_RS14355 (QAO35_14390) | - | 2849374..2849595 (-) | 222 | WP_000815400.1 | DUF2483 family protein | - |
| QAO35_RS14360 (QAO35_14395) | - | 2849605..2849865 (-) | 261 | WP_000291089.1 | DUF1108 family protein | - |
| QAO35_RS14365 (QAO35_14400) | - | 2849959..2850120 (-) | 162 | WP_000066026.1 | DUF1270 family protein | - |
| QAO35_RS14370 (QAO35_14405) | - | 2850113..2850250 (-) | 138 | WP_000230552.1 | hypothetical protein | - |
| QAO35_RS14375 (QAO35_14410) | - | 2850300..2850530 (+) | 231 | WP_000395457.1 | hypothetical protein | - |
| QAO35_RS14380 (QAO35_14415) | - | 2850505..2850681 (-) | 177 | WP_001094935.1 | hypothetical protein | - |
| QAO35_RS14385 (QAO35_14420) | - | 2850697..2851449 (-) | 753 | WP_023487064.1 | phage antirepressor KilAC domain-containing protein | - |
| QAO35_RS14390 (QAO35_14425) | - | 2851451..2851636 (-) | 186 | WP_000933363.1 | helix-turn-helix domain-containing protein | - |
| QAO35_RS14395 (QAO35_14430) | - | 2852076..2852285 (+) | 210 | WP_000642492.1 | hypothetical protein | - |
| QAO35_RS14400 (QAO35_14435) | - | 2852275..2852418 (-) | 144 | WP_000939498.1 | hypothetical protein | - |
| QAO35_RS14405 (QAO35_14440) | - | 2852433..2852876 (-) | 444 | WP_000435360.1 | hypothetical protein | - |
| QAO35_RS14410 (QAO35_14445) | - | 2852893..2853117 (-) | 225 | WP_000333485.1 | DUF739 family protein | - |
| QAO35_RS14415 (QAO35_14450) | - | 2853279..2853659 (+) | 381 | WP_411888872.1 | helix-turn-helix domain-containing protein | - |
| QAO35_RS14420 (QAO35_14455) | - | 2853681..2853977 (+) | 297 | Protein_2804 | toxin | - |
| QAO35_RS14425 (QAO35_14460) | - | 2854078..2855681 (-) | 1604 | Protein_2805 | IS1182-like element IS1182 family transposase | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 15947.45 Da Isoelectric Point: 5.8790
>NTDB_id=818234 QAO35_RS14345 WP_015978401.1 2848333..2848758(-) (ssbA) [Staphylococcus aureus strain SW-MRSA61]
MLNRTVLVGRLTKDPEYRTTPNGVSVTTFTIAVNRTFTNAQGEREADFINCVTFRKQAENVNNYLSKGSLAGVDGRLQSR
SYENKDGQRVFVTEVVADSVQFLEPKNNNQQPNNNYHQQRQTQTGNNPFDNNADSIEDLPF
MLNRTVLVGRLTKDPEYRTTPNGVSVTTFTIAVNRTFTNAQGEREADFINCVTFRKQAENVNNYLSKGSLAGVDGRLQSR
SYENKDGQRVFVTEVVADSVQFLEPKNNNQQPNNNYHQQRQTQTGNNPFDNNADSIEDLPF
Nucleotide
Download Length: 426 bp
>NTDB_id=818234 QAO35_RS14345 WP_015978401.1 2848333..2848758(-) (ssbA) [Staphylococcus aureus strain SW-MRSA61]
ATGTTAAATAGAACAGTATTAGTAGGACGCTTAACAAAAGATCCAGAATATAGAACAACGCCAAATGGTGTGAGTGTTAC
CACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAGAACGTGAGGCAGACTTTATTAACTGTGTAACTT
TTAGAAAACAAGCAGAAAATGTAAATAATTATTTATCCAAAGGGTCATTGGCTGGCGTTGATGGACGTTTACAATCACGC
AGTTATGAAAACAAAGACGGGCAACGTGTATTTGTCACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAACAACGCAG
ACTCTATAGAGGATCTTCCTTTTTAG
ATGTTAAATAGAACAGTATTAGTAGGACGCTTAACAAAAGATCCAGAATATAGAACAACGCCAAATGGTGTGAGTGTTAC
CACTTTCACTATCGCAGTTAACAGAACATTTACTAACGCTCAAGGAGAACGTGAGGCAGACTTTATTAACTGTGTAACTT
TTAGAAAACAAGCAGAAAATGTAAATAATTATTTATCCAAAGGGTCATTGGCTGGCGTTGATGGACGTTTACAATCACGC
AGTTATGAAAACAAAGACGGGCAACGTGTATTTGTCACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAACAACGCAG
ACTCTATAGAGGATCTTCCTTTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
74.576 |
83.688 |
0.624 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50 |
100 |
0.603 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
75.177 |
0.44 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
42.553 |
100 |
0.426 |
| ssbA | Streptococcus mutans UA159 |
41.844 |
100 |
0.418 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
45.763 |
83.688 |
0.383 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
45.763 |
83.688 |
0.383 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
44.915 |
83.688 |
0.376 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
44.915 |
83.688 |
0.376 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
44.915 |
83.688 |
0.376 |
| ssbB/cilA | Streptococcus mitis SK321 |
44.915 |
83.688 |
0.376 |