Detailed information
Bioinformatically predicted
Overview
| Name | ssbA | Type | Machinery gene |
| Locus tag | QAO35_RS10270 | Genome accession | NZ_CP123074 |
| Coordinates | 2070952..2071377 (-) | Length | 141 a.a. |
| NCBI ID | WP_000934384.1 | Uniprot ID | - |
| Organism | Staphylococcus aureus strain SW-MRSA61 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2035985..2081215 | 2070952..2071377 | within | 0 |
Gene organization within MGE regions
Location: 2035985..2081215
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QAO35_RS10015 (QAO35_10045) | - | 2035985..2037430 (-) | 1446 | WP_217655209.1 | SH3 domain-containing protein | - |
| QAO35_RS10020 (QAO35_10050) | - | 2037411..2037848 (-) | 438 | WP_000354128.1 | phage holin | - |
| QAO35_RS10025 (QAO35_10055) | - | 2037904..2038299 (-) | 396 | WP_411888883.1 | hypothetical protein | - |
| QAO35_RS10030 (QAO35_10060) | - | 2038304..2039542 (-) | 1239 | WP_000276650.1 | BppU family phage baseplate upper protein | - |
| QAO35_RS10035 (QAO35_10065) | - | 2039555..2041429 (-) | 1875 | WP_153153336.1 | glucosaminidase domain-containing protein | - |
| QAO35_RS10040 (QAO35_10070) | - | 2041566..2041865 (-) | 300 | WP_000466769.1 | DUF2951 domain-containing protein | - |
| QAO35_RS10045 (QAO35_10075) | - | 2041906..2042079 (-) | 174 | WP_001790193.1 | XkdX family protein | - |
| QAO35_RS10050 (QAO35_10080) | - | 2042083..2042460 (-) | 378 | WP_000705893.1 | DUF2977 domain-containing protein | - |
| QAO35_RS10055 (QAO35_10085) | - | 2042460..2044283 (-) | 1824 | WP_411907239.1 | phage baseplate upper protein | - |
| QAO35_RS10060 (QAO35_10090) | - | 2044283..2046181 (-) | 1899 | WP_000323256.1 | hypothetical protein | - |
| QAO35_RS10065 (QAO35_10095) | - | 2046194..2048080 (-) | 1887 | WP_001604154.1 | SGNH/GDSL hydrolase family protein | - |
| QAO35_RS10070 (QAO35_10100) | - | 2048091..2049032 (-) | 942 | WP_001604155.1 | phage tail domain-containing protein | - |
| QAO35_RS10075 (QAO35_10105) | - | 2049047..2051932 (-) | 2886 | WP_031870344.1 | terminase | - |
| QAO35_RS10080 (QAO35_10110) | - | 2051936..2052220 (-) | 285 | WP_000880587.1 | hypothetical protein | - |
| QAO35_RS10085 (QAO35_10115) | - | 2052265..2052771 (-) | 507 | WP_000134337.1 | tail assembly chaperone | - |
| QAO35_RS10090 (QAO35_10120) | - | 2052838..2053395 (-) | 558 | WP_000057582.1 | tail protein | - |
| QAO35_RS10095 (QAO35_10125) | - | 2053396..2053821 (-) | 426 | WP_000270190.1 | DUF3168 domain-containing protein | - |
| QAO35_RS10100 (QAO35_10130) | - | 2053834..2053992 (-) | 159 | Protein_1951 | HK97 gp10 family phage protein | - |
| QAO35_RS10105 (QAO35_10135) | - | 2054184..2054867 (-) | 684 | WP_044593021.1 | hypothetical protein | - |
| QAO35_RS10110 (QAO35_10140) | - | 2054996..2055250 (-) | 255 | Protein_1953 | HK97 gp10 family phage protein | - |
| QAO35_RS10115 (QAO35_10145) | - | 2055237..2055572 (-) | 336 | WP_031870341.1 | phage head closure protein | - |
| QAO35_RS10120 (QAO35_10150) | - | 2055565..2055879 (-) | 315 | WP_015978368.1 | phage head-tail connector protein | - |
| QAO35_RS10125 (QAO35_10155) | - | 2055879..2056205 (-) | 327 | WP_031870340.1 | Rho termination factor N-terminal domain-containing protein | - |
| QAO35_RS10130 (QAO35_10160) | - | 2056222..2057181 (-) | 960 | WP_001044072.1 | hypothetical protein | - |
| QAO35_RS10135 (QAO35_10165) | - | 2057193..2057717 (-) | 525 | WP_000366930.1 | phage scaffolding protein | - |
| QAO35_RS10140 (QAO35_10170) | - | 2057815..2058795 (-) | 981 | WP_015978359.1 | phage head morphogenesis protein | - |
| QAO35_RS10145 (QAO35_10175) | - | 2058734..2060212 (-) | 1479 | WP_111023807.1 | phage portal protein | - |
| QAO35_RS10150 (QAO35_10180) | - | 2060166..2061374 (-) | 1209 | WP_001606760.1 | PBSX family phage terminase large subunit | - |
| QAO35_RS10155 (QAO35_10185) | - | 2061367..2061861 (-) | 495 | WP_031870337.1 | terminase small subunit | - |
| QAO35_RS10160 (QAO35_10190) | - | 2062190..2062612 (-) | 423 | WP_000162701.1 | RinA family phage transcriptional activator | - |
| QAO35_RS10165 (QAO35_10195) | - | 2062636..2062782 (-) | 147 | WP_000989960.1 | hypothetical protein | - |
| QAO35_RS10170 (QAO35_10200) | rinB | 2062783..2062956 (-) | 174 | WP_000591891.1 | transcriptional activator RinB | - |
| QAO35_RS10175 (QAO35_10205) | - | 2062949..2063185 (-) | 237 | WP_031870336.1 | hypothetical protein | - |
| QAO35_RS10180 (QAO35_10210) | - | 2063210..2063446 (-) | 237 | WP_031870335.1 | DUF1381 domain-containing protein | - |
| QAO35_RS10185 (QAO35_10215) | - | 2063483..2064025 (-) | 543 | WP_000185654.1 | dUTP diphosphatase | - |
| QAO35_RS10190 (QAO35_10220) | - | 2064030..2064266 (-) | 237 | WP_001065023.1 | DUF1024 family protein | - |
| QAO35_RS10195 (QAO35_10225) | - | 2064259..2064567 (-) | 309 | WP_000144710.1 | hypothetical protein | - |
| QAO35_RS10200 (QAO35_10230) | - | 2064564..2064911 (-) | 348 | WP_000979209.1 | YopX family protein | - |
| QAO35_RS10205 (QAO35_10235) | - | 2064908..2065309 (-) | 402 | WP_000695762.1 | hypothetical protein | - |
| QAO35_RS10210 (QAO35_10240) | - | 2065322..2065570 (-) | 249 | WP_012068339.1 | SAV1978 family virulence-associated passenger protein | - |
| QAO35_RS10215 (QAO35_10245) | - | 2065570..2065824 (-) | 255 | WP_000022735.1 | DUF3310 domain-containing protein | - |
| QAO35_RS10220 (QAO35_10250) | - | 2065910..2066095 (-) | 186 | WP_001187230.1 | DUF3113 family protein | - |
| QAO35_RS10225 (QAO35_10255) | - | 2066100..2066504 (-) | 405 | WP_031895320.1 | DUF1064 domain-containing protein | - |
| QAO35_RS10230 (QAO35_10260) | - | 2066501..2066926 (-) | 426 | WP_000451861.1 | phage N-6-adenine-methyltransferase | - |
| QAO35_RS10235 (QAO35_10265) | - | 2066936..2067157 (-) | 222 | WP_001123688.1 | DUF3269 family protein | - |
| QAO35_RS10240 (QAO35_10270) | - | 2067161..2067376 (-) | 216 | WP_001024405.1 | hypothetical protein | - |
| QAO35_RS10245 (QAO35_10275) | - | 2067373..2068614 (-) | 1242 | WP_015445891.1 | DnaB helicase C-terminal domain-containing protein | - |
| QAO35_RS10250 (QAO35_10280) | - | 2068611..2068967 (-) | 357 | WP_001132243.1 | hypothetical protein | - |
| QAO35_RS10255 (QAO35_10285) | - | 2068967..2069722 (-) | 756 | WP_001037657.1 | DnaD domain protein | - |
| QAO35_RS10260 (QAO35_10290) | - | 2069715..2070389 (-) | 675 | WP_015445893.1 | putative HNHc nuclease | - |
| QAO35_RS10265 (QAO35_10295) | - | 2070390..2070941 (-) | 552 | WP_001004506.1 | NUMOD4 domain-containing protein | - |
| QAO35_RS10270 (QAO35_10300) | ssbA | 2070952..2071377 (-) | 426 | WP_000934384.1 | single-stranded DNA-binding protein | Machinery gene |
| QAO35_RS10275 (QAO35_10305) | - | 2071377..2072000 (-) | 624 | WP_000139720.1 | DUF1071 domain-containing protein | - |
| QAO35_RS10280 (QAO35_10310) | - | 2071993..2072214 (-) | 222 | WP_000815403.1 | DUF2483 family protein | - |
| QAO35_RS10285 (QAO35_10315) | - | 2072224..2072484 (-) | 261 | WP_000291076.1 | DUF1108 family protein | - |
| QAO35_RS10290 (QAO35_10320) | - | 2072576..2072737 (-) | 162 | WP_001668917.1 | DUF1270 family protein | - |
| QAO35_RS10295 (QAO35_10325) | - | 2072730..2072867 (-) | 138 | WP_000230552.1 | hypothetical protein | - |
| QAO35_RS10300 (QAO35_10330) | - | 2072917..2073147 (+) | 231 | WP_000395457.1 | hypothetical protein | - |
| QAO35_RS10305 (QAO35_10335) | - | 2073122..2073298 (-) | 177 | WP_001094935.1 | hypothetical protein | - |
| QAO35_RS10310 (QAO35_10340) | - | 2073314..2074066 (-) | 753 | WP_023487064.1 | phage antirepressor KilAC domain-containing protein | - |
| QAO35_RS10315 (QAO35_10345) | - | 2074068..2074253 (-) | 186 | WP_000933363.1 | helix-turn-helix domain-containing protein | - |
| QAO35_RS10320 (QAO35_10350) | - | 2074693..2074902 (+) | 210 | WP_000642492.1 | hypothetical protein | - |
| QAO35_RS10325 (QAO35_10355) | - | 2074892..2075035 (-) | 144 | WP_000939498.1 | hypothetical protein | - |
| QAO35_RS10330 (QAO35_10360) | - | 2075050..2075493 (-) | 444 | WP_023487065.1 | hypothetical protein | - |
| QAO35_RS10335 (QAO35_10365) | - | 2075506..2075754 (-) | 249 | WP_000272859.1 | helix-turn-helix domain-containing protein | - |
| QAO35_RS10340 (QAO35_10370) | - | 2075918..2076241 (+) | 324 | WP_001260487.1 | helix-turn-helix domain-containing protein | - |
| QAO35_RS10345 (QAO35_10375) | - | 2076254..2076718 (+) | 465 | WP_000525007.1 | hypothetical protein | - |
| QAO35_RS10350 (QAO35_10380) | - | 2076750..2077430 (+) | 681 | WP_000392109.1 | type II toxin-antitoxin system PemK/MazF family toxin | - |
| QAO35_RS10355 (QAO35_10385) | - | 2077637..2079022 (+) | 1386 | WP_000861313.1 | recombinase family protein | - |
| QAO35_RS10360 (QAO35_10390) | rpmF | 2079139..2079312 (-) | 174 | WP_000290472.1 | 50S ribosomal protein L32 | - |
| QAO35_RS10365 (QAO35_10395) | - | 2079392..2079949 (-) | 558 | WP_000872158.1 | YceD family protein | - |
| QAO35_RS10370 (QAO35_10400) | - | 2080076..2081215 (+) | 1140 | WP_000843611.1 | nucleotidyltransferase | - |
Sequence
Protein
Download Length: 141 a.a. Molecular weight: 15784.48 Da Isoelectric Point: 8.4826
>NTDB_id=818226 QAO35_RS10270 WP_000934384.1 2070952..2071377(-) (ssbA) [Staphylococcus aureus strain SW-MRSA61]
MLNRAVLVGRLTKDPELRSAPNGVNVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
SYENKVGQRVFVTEVVADSVQFLEPKNNNQQPNNNYHQQRQTQTGNNPFDNNADSIEDLPF
MLNRAVLVGRLTKDPELRSAPNGVNVGTFTLAVNRTFTNAQGEREADFINVVVFKKQAENVKNYLSKGSLAGVDGRLQTR
SYENKVGQRVFVTEVVADSVQFLEPKNNNQQPNNNYHQQRQTQTGNNPFDNNADSIEDLPF
Nucleotide
Download Length: 426 bp
>NTDB_id=818226 QAO35_RS10270 WP_000934384.1 2070952..2071377(-) (ssbA) [Staphylococcus aureus strain SW-MRSA61]
ATGTTAAACAGAGCAGTATTAGTAGGACGCTTAACAAAAGACCCAGAATTAAGAAGCGCGCCAAATGGCGTAAATGTAGG
TACATTCACATTGGCAGTAAACAGAACATTCACGAATGCTCAAGGCGAGCGTGAAGCAGATTTTATAAACGTAGTAGTGT
TCAAGAAACAAGCTGAAAATGTTAAAAACTACCTTTCTAAAGGGTCGCTGGCAGGTGTAGACGGGCGATTACAAACACGT
AGCTACGAAAATAAAGTCGGGCAACGTGTATTTGTGACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAACAACGCAG
ACTCTATAGAGGATCTTCCTTTTTAG
ATGTTAAACAGAGCAGTATTAGTAGGACGCTTAACAAAAGACCCAGAATTAAGAAGCGCGCCAAATGGCGTAAATGTAGG
TACATTCACATTGGCAGTAAACAGAACATTCACGAATGCTCAAGGCGAGCGTGAAGCAGATTTTATAAACGTAGTAGTGT
TCAAGAAACAAGCTGAAAATGTTAAAAACTACCTTTCTAAAGGGTCGCTGGCAGGTGTAGACGGGCGATTACAAACACGT
AGCTACGAAAATAAAGTCGGGCAACGTGTATTTGTGACAGAAGTAGTAGCGGACAGTGTTCAATTCTTAGAACCGAAGAA
TAACAACCAACAACCAAACAACAATTATCATCAACAAAGACAAACTCAAACTGGTAATAATCCTTTTGATAACAACGCAG
ACTCTATAGAGGATCTTCCTTTTTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
73.729 |
83.688 |
0.617 |
| ssb | Latilactobacillus sakei subsp. sakei 23K |
50 |
100 |
0.603 |
| ssbB | Bacillus subtilis subsp. subtilis str. 168 |
58.491 |
75.177 |
0.44 |
| ssbB | Streptococcus sobrinus strain NIDR 6715-7 |
41.844 |
100 |
0.418 |
| ssbA | Streptococcus mutans UA159 |
46.087 |
81.56 |
0.376 |
| ssbB/cilA | Streptococcus mitis NCTC 12261 |
44.915 |
83.688 |
0.376 |
| ssbB/cilA | Streptococcus pneumoniae TIGR4 |
44.915 |
83.688 |
0.376 |
| ssbB/cilA | Streptococcus pneumoniae Rx1 |
44.068 |
83.688 |
0.369 |
| ssbB/cilA | Streptococcus pneumoniae D39 |
44.068 |
83.688 |
0.369 |
| ssbB/cilA | Streptococcus pneumoniae R6 |
44.068 |
83.688 |
0.369 |
| ssbB/cilA | Streptococcus mitis SK321 |
44.068 |
83.688 |
0.369 |