Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   LLUL033_RS02205 Genome accession   NZ_CP122980
Coordinates   425385..425774 (+) Length   129 a.a.
NCBI ID   WP_259692192.1    Uniprot ID   -
Organism   Lactococcus cremoris strain UL033     
Function   ssDNA binding (predicted from homology)   
DNA processing

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 425385..436996 425385..425774 within 0


Gene organization within MGE regions


Location: 425385..436996
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LLUL033_RS02205 (LLUL033_02190) ssbB 425385..425774 (+) 390 WP_259692192.1 single-stranded DNA-binding protein Machinery gene
  LLUL033_RS02210 (LLUL033_02195) groES 425893..426177 (+) 285 WP_011834459.1 co-chaperone GroES -
  LLUL033_RS02215 (LLUL033_02200) groL 426264..427892 (+) 1629 WP_011834460.1 chaperonin GroEL -
  LLUL033_RS02220 (LLUL033_02205) - 427942..428754 (-) 813 WP_011675466.1 MBL fold metallo-hydrolase -
  LLUL033_RS02225 (LLUL033_02210) - 428945..430372 (-) 1428 WP_011834461.1 cell wall metabolism sensor histidine kinase WalK -
  LLUL033_RS02230 (LLUL033_02215) yycF 430365..431066 (-) 702 WP_259692191.1 response regulator YycF -
  LLUL033_RS02235 (LLUL033_02220) tmk 431244..431879 (+) 636 WP_011834462.1 dTMP kinase -
  LLUL033_RS02240 (LLUL033_02225) - 432012..432872 (+) 861 WP_011834463.1 DNA polymerase III subunit delta' -
  LLUL033_RS02245 (LLUL033_02230) ricT 432922..433704 (+) 783 WP_011834464.1 stage 0 sporulation family protein -
  LLUL033_RS02250 (LLUL033_02235) yabA 433697..434023 (+) 327 WP_011675472.1 DNA replication initiation control protein YabA -
  LLUL033_RS02255 (LLUL033_02240) rsmI 434023..434898 (+) 876 WP_259692190.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  LLUL033_RS02260 (LLUL033_02245) - 434976..435167 (-) 192 WP_011834467.1 hypothetical protein -
  LLUL033_RS02265 (LLUL033_02250) - 435242..436054 (-) 813 WP_259687612.1 ABC transporter permease -
  LLUL033_RS02270 (LLUL033_02255) - 436067..436996 (-) 930 WP_042747976.1 daunorubicin resistance protein DrrA family ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14796.92 Da        Isoelectric Point: 9.2952

>NTDB_id=817665 LLUL033_RS02205 WP_259692192.1 425385..425774(+) (ssbB) [Lactococcus cremoris strain UL033]
MNKTMLIGRLTNAPEISKTTNNKSYVRVTLAVNRRFKNEKGEREADFISIIIWRKSAETLVSYAKKGSLISVEGEIRTRN
YTDKNEQKHYITEILGLSYDLLESRATLALRESAVKTEELLLEADELPF

Nucleotide


Download         Length: 390 bp        

>NTDB_id=817665 LLUL033_RS02205 WP_259692192.1 425385..425774(+) (ssbB) [Lactococcus cremoris strain UL033]
ATGAATAAAACCATGTTGATTGGTCGTTTAACAAACGCACCTGAAATTTCGAAAACAACGAACAATAAATCTTATGTCCG
TGTGACTCTGGCAGTCAATCGCCGCTTCAAAAATGAAAAAGGAGAGCGAGAAGCAGACTTTATCTCGATAATTATATGGA
GAAAATCAGCAGAAACATTGGTTTCCTATGCTAAAAAAGGAAGTCTTATTTCTGTAGAGGGAGAGATTAGAACTAGAAAT
TATACTGATAAAAATGAACAGAAACACTATATTACAGAAATCTTAGGTTTGAGCTATGATTTATTGGAAAGTCGTGCGAC
TCTTGCCTTGAGAGAAAGCGCTGTAAAGACTGAGGAACTCTTACTTGAAGCTGATGAGCTCCCTTTCTGA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(1-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Lactococcus lactis subsp. cremoris KW2

98.45

100

0.985
  ssbB Streptococcus sobrinus strain NIDR 6715-7

60.769

100

0.612
  ssbB/cilA Streptococcus pneumoniae TIGR4

56.154

100

0.566
  ssbB/cilA Streptococcus pneumoniae Rx1

55.385

100

0.558
  ssbB/cilA Streptococcus pneumoniae D39

55.385

100

0.558
  ssbB/cilA Streptococcus pneumoniae R6

55.385

100

0.558
  ssbB/cilA Streptococcus mitis NCTC 12261

55.385

100

0.558
  ssbB/cilA Streptococcus mitis SK321

55.385

100

0.558
  ssbA Streptococcus mutans UA159

53.846

100

0.543
  ssb Latilactobacillus sakei subsp. sakei 23K

40.833

93.023

0.38
  ssbA Bacillus subtilis subsp. subtilis str. 168

44.762

81.395

0.364