Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB/cilA   Type   Machinery gene
Locus tag   R8563_RS09055 Genome accession   NZ_AP026917
Coordinates   1746422..1746799 (-) Length   125 a.a.
NCBI ID   WP_000580361.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain PZ900700007     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 1741422..1751799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  R8563_RS09030 (PC0007_17520) - 1741772..1742104 (-) 333 WP_001810556.1 helix-turn-helix transcriptional regulator -
  R8563_RS09035 (PC0007_17530) - 1742117..1742890 (-) 774 WP_000566047.1 class I SAM-dependent methyltransferase -
  R8563_RS09040 - 1743337..1744092 (-) 756 Protein_1765 epoxyqueuosine reductase QueH -
  R8563_RS09045 (PC0007_17560) groL 1744230..1745852 (-) 1623 WP_000031573.1 chaperonin GroEL -
  R8563_RS09050 (PC0007_17570) groES 1745868..1746152 (-) 285 WP_000917330.1 co-chaperone GroES -
  R8563_RS09055 (PC0007_17580) ssbB/cilA 1746422..1746799 (-) 378 WP_000580361.1 single-stranded DNA-binding protein Machinery gene
  R8563_RS09060 (PC0007_17590) - 1747003..1748349 (-) 1347 WP_050206149.1 IS1380-like element ISSpn5 family transposase -
  R8563_RS09065 (PC0007_17600) - 1748603..1749364 (-) 762 WP_001107757.1 SDR family oxidoreductase -
  R8563_RS09070 (PC0007_17610) ytpR 1749397..1750023 (-) 627 WP_000578309.1 YtpR family tRNA-binding protein -
  R8563_RS09075 (PC0007_17620) - 1750039..1750356 (-) 318 WP_000615767.1 thioredoxin family protein -
  R8563_RS09080 (PC0007_17630) - 1750353..1750652 (-) 300 WP_001013973.1 DUF4651 domain-containing protein -
  R8563_RS09085 - 1750850..1750912 (-) 63 WP_219300018.1 hypothetical protein -
  R8563_RS09090 (PC0007_17640) - 1750937..1751128 (-) 192 WP_000122504.1 hypothetical protein -

Sequence

Protein


Download         Length: 125 a.a.        Molecular weight: 14176.95 Da        Isoelectric Point: 5.2813

>NTDB_id=81750 R8563_RS09055 WP_000580361.1 1746422..1746799(-) (ssbB/cilA) [Streptococcus pneumoniae strain PZ900700007]
MIGRLTSTPELHKTNNDKSVARATIAVNRRYKDQNGEREADFVNMVLWGRLAETLASYATKGSLISVDGELRTRRFEKNG
QMNYVTEVLVTGFQLLESRAQRAMRENNAGQDLADLVLEEEELPF

Nucleotide


Download         Length: 378 bp        

>NTDB_id=81750 R8563_RS09055 WP_000580361.1 1746422..1746799(-) (ssbB/cilA) [Streptococcus pneumoniae strain PZ900700007]
TTGATTGGGCGTTTAACGTCTACACCAGAATTGCACAAAACCAACAATGACAAGTCGGTAGCGCGAGCAACTATCGCTGT
CAACCGTCGTTACAAAGACCAAAACGGTGAACGTGAAGCTGATTTTGTCAATATGGTCCTATGGGGCAGGCTAGCAGAAA
CTTTGGCAAGCTACGCAACCAAAGGTAGTCTCATTTCCGTTGATGGAGAATTGCGTACCCGTCGCTTTGAGAAAAATGGT
CAGATGAACTATGTAACCGAAGTCCTTGTGACAGGATTCCAACTCTTAGAAAGTCGTGCTCAACGTGCCATGCGTGAAAA
TAATGCAGGCCAAGATTTGGCAGATTTGGTCTTGGAAGAGGAAGAATTGCCATTTTAA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(1-95)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB/cilA Streptococcus pneumoniae D39

100

100

1
  ssbB/cilA Streptococcus pneumoniae Rx1

100

100

1
  ssbB/cilA Streptococcus pneumoniae R6

100

100

1
  ssbB/cilA Streptococcus pneumoniae TIGR4

99.2

100

0.992
  ssbB/cilA Streptococcus mitis SK321

98.4

100

0.984
  ssbB/cilA Streptococcus mitis NCTC 12261

98.4

100

0.984
  ssbA Streptococcus mutans UA159

73.6

100

0.736
  ssbB Streptococcus sobrinus strain NIDR 6715-7

68.8

100

0.688
  ssbB Lactococcus lactis subsp. cremoris KW2

60.185

86.4

0.52
  ssbA Bacillus subtilis subsp. subtilis str. 168

51

80

0.408
  ssb Latilactobacillus sakei subsp. sakei 23K

46.729

85.6

0.4

Multiple sequence alignment