Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QC826_RS23995 Genome accession   NZ_CP122407
Coordinates   5213590..5214807 (+) Length   405 a.a.
NCBI ID   WP_279762767.1    Uniprot ID   -
Organism   Rugamonas sp. DEMB1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5208590..5219807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QC826_RS23975 (QC826_23975) puuE 5208784..5209737 (-) 954 WP_279762764.1 allantoinase PuuE -
  QC826_RS23980 (QC826_23980) uraH 5209861..5210211 (+) 351 WP_099415112.1 hydroxyisourate hydrolase -
  QC826_RS23985 (QC826_23985) - 5210404..5211689 (+) 1286 Protein_4748 HlyC/CorC family transporter -
  QC826_RS23990 (QC826_23990) pilB 5211855..5213579 (+) 1725 WP_279762765.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QC826_RS23995 (QC826_23995) pilC 5213590..5214807 (+) 1218 WP_279762767.1 type II secretion system F family protein Machinery gene
  QC826_RS24000 (QC826_24000) - 5214971..5215246 (+) 276 WP_279762769.1 hypothetical protein -
  QC826_RS24005 (QC826_24005) - 5215434..5217581 (+) 2148 WP_279762770.1 serine/threonine-protein kinase -
  QC826_RS24010 (QC826_24010) - 5217635..5218162 (+) 528 WP_279762771.1 hypothetical protein -
  QC826_RS24015 (QC826_24015) pilD 5218397..5219266 (+) 870 WP_279762772.1 A24 family peptidase Machinery gene

Sequence

Protein


Download         Length: 405 a.a.        Molecular weight: 44298.17 Da        Isoelectric Point: 9.7984

>NTDB_id=815478 QC826_RS23995 WP_279762767.1 5213590..5214807(+) (pilC) [Rugamonas sp. DEMB1]
MATSSGNQVKESVFAWEGKDKSGKTVRGELRAGGEAVVNVTLRRQGIMVTKVKKKVYRSGKKITDKDISLFTRQLATMMK
AGVPLLQSFDIVGKGHSNPSVSKLVMDLRADIETGTSLNQAFRKFPLYFDPLFCNLVGAGEQAGILEDLLTRLAIYKEKT
LAMKAKIKSALMYPVSILAIAFIVTAVIMIWVVPAFKEVFASFGANLPAPTLFVMAVSEYFVRYWYLIFGSIFGSLYFFF
QAWQRSPKVQRNMDILLLKLPIFGEVIRKATIARWTRTLATMFAAGVPLVESLDSVGGAAGNAVYLDATRRIQNEVSTGT
SLTVAMQNADVFPNMVTQMVAIGEESGSLDAMLGKVADFYEEEVDEAVASLSSLMEPLIMVILGVLIGGLVVAMYLPIFK
LGSVV

Nucleotide


Download         Length: 1218 bp        

>NTDB_id=815478 QC826_RS23995 WP_279762767.1 5213590..5214807(+) (pilC) [Rugamonas sp. DEMB1]
ATGGCGACATCGAGCGGCAACCAGGTCAAGGAATCGGTCTTCGCCTGGGAGGGCAAGGACAAGAGCGGCAAGACGGTGCG
CGGCGAGCTGCGCGCCGGCGGCGAGGCCGTGGTCAACGTGACGCTGCGGCGGCAGGGCATCATGGTGACCAAGGTCAAGA
AAAAGGTCTACCGCAGCGGCAAGAAGATCACCGACAAGGACATCTCCCTGTTCACCCGCCAGCTGGCGACGATGATGAAG
GCCGGCGTGCCGCTGCTGCAATCGTTCGACATCGTCGGCAAGGGCCATTCCAACCCGTCCGTGTCCAAGCTGGTGATGGA
TTTGCGCGCCGACATCGAGACCGGCACCAGCCTGAACCAGGCCTTCCGCAAGTTCCCGCTGTACTTCGACCCGCTGTTCT
GCAACCTGGTGGGCGCCGGCGAGCAGGCCGGCATTTTGGAGGACCTGCTGACCCGGCTGGCGATCTACAAGGAAAAGACC
CTGGCGATGAAGGCCAAGATCAAGTCGGCGCTGATGTACCCGGTGTCGATCCTGGCCATCGCCTTCATCGTCACGGCCGT
CATCATGATCTGGGTGGTGCCGGCCTTCAAGGAGGTGTTCGCCAGCTTCGGCGCCAACCTGCCGGCGCCGACGCTGTTCG
TCATGGCCGTCTCCGAGTATTTCGTGCGCTACTGGTATTTGATCTTCGGCAGCATCTTCGGCAGCCTGTACTTCTTCTTC
CAGGCCTGGCAGCGCTCGCCCAAGGTGCAGCGCAACATGGACATTCTGCTGCTCAAGCTGCCCATTTTCGGCGAGGTGAT
CCGCAAGGCCACCATCGCCCGCTGGACCCGCACCCTGGCCACCATGTTCGCCGCCGGCGTGCCGCTGGTCGAGTCGCTCG
ACTCGGTCGGCGGCGCCGCCGGCAACGCCGTCTACCTGGACGCCACGCGGCGCATCCAGAACGAGGTCAGCACCGGCACC
AGCCTGACGGTGGCGATGCAGAACGCCGACGTGTTCCCCAACATGGTGACGCAGATGGTCGCCATCGGCGAGGAGTCCGG
CTCGCTCGACGCCATGCTGGGCAAGGTGGCCGACTTCTACGAGGAGGAGGTCGACGAGGCGGTGGCCTCGCTGTCGAGCC
TGATGGAGCCGCTGATCATGGTCATCCTGGGCGTGCTGATCGGCGGCCTGGTGGTGGCGATGTACCTGCCGATCTTCAAG
CTCGGCTCGGTGGTGTAG

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(71-194)

Type II secretion system (T2SS), protein F (T2SSF)

(275-397)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

54.75

98.765

0.541
  pilG Neisseria gonorrhoeae MS11

52.897

98.025

0.519
  pilC Legionella pneumophila strain ERS1305867

53.03

97.778

0.519
  pilG Neisseria meningitidis 44/76-A

52.645

98.025

0.516
  pilC Acinetobacter baumannii D1279779

51.889

98.025

0.509
  pilC Acinetobacter baylyi ADP1

50.754

98.272

0.499
  pilC Vibrio campbellii strain DS40M4

39.547

98.025

0.388
  pilC Vibrio cholerae strain A1552

39.547

98.025

0.388
  pilC Thermus thermophilus HB27

37.594

98.519

0.37