Detailed information NTG0815479

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: QC826_RS24015
• Genome accession: NZ_CP122407
• Coordinates: 5218397..5219266 (+)
• Length: 289 a.a.
• NCBI ID: WP_279762772.1
• Uniprot ID: -
• Organism: Rugamonas sp. DEMB1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5213397..5224266

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QC826_RS23995 (QC826_23995)	pilC	5213590..5214807 (+)	1218	WP_279762767.1	type II secretion system F family protein	Machinery gene
QC826_RS24000 (QC826_24000)	-	5214971..5215246 (+)	276	WP_279762769.1	hypothetical protein	-
QC826_RS24005 (QC826_24005)	-	5215434..5217581 (+)	2148	WP_279762770.1	serine/threonine-protein kinase	-
QC826_RS24010 (QC826_24010)	-	5217635..5218162 (+)	528	WP_279762771.1	hypothetical protein	-
QC826_RS24015 (QC826_24015)	pilD	5218397..5219266 (+)	870	WP_279762772.1	A24 family peptidase	Machinery gene
QC826_RS24020 (QC826_24020)	coaE	5219281..5219955 (+)	675	WP_279762773.1	dephospho-CoA kinase	-
QC826_RS24025 (QC826_24025)	zapD	5220020..5220775 (+)	756	WP_093388275.1	cell division protein ZapD	-
QC826_RS24030 (QC826_24030)	yacG	5220790..5220960 (+)	171	WP_279762775.1	DNA gyrase inhibitor YacG	-
QC826_RS24035 (QC826_24035)	-	5221082..5221504 (-)	423	WP_279766594.1	NUDIX domain-containing protein	-
QC826_RS24040 (QC826_24040)	-	5221609..5222493 (-)	885	WP_279762776.1	ATP-binding protein	-
QC826_RS24045 (QC826_24045)	argJ	5222503..5223741 (-)	1239	WP_279762777.1	bifunctional glutamate N-acetyltransferase/amino-acid acetyltransferase ArgJ	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31069.80 Da
• Isoelectric Point: 7.7614

>NTDB_id=815479 QC826_RS24015 WP_279762772.1 5218397..5219266(+) (pilD) [Rugamonas sp. DEMB1]
MPPHPLLFAAPADFAISLLAGLFGLLIGSFLNVVIYRVPKMMQRESDNYVAVESGREAPHAERFNLMVPRSACPHCGHQI
TALENIPLLSWLVLRGKCSACRAPISPRYPAVELLTGLLSALLVWRFGSGWAGLAALFFLYSLIAMTFIDADTQLLPDDL
TYPLLWAGLLVNLNGTFVPLHDAVVGAAAGYLALWSIYWLFKLATGKEGMGYGDFKLLAALGAWLGWAMLPTIILLSSVV
GALVGISLIVFARHGRNNPIPFGPYLAAAGLIAMLYGNSISAFTLGLLG

Nucleotide

• Length: 870 bp

>NTDB_id=815479 QC826_RS24015 WP_279762772.1 5218397..5219266(+) (pilD) [Rugamonas sp. DEMB1]
ATGCCCCCACACCCCCTGCTGTTCGCCGCCCCGGCCGACTTCGCCATCAGCCTGCTGGCCGGCCTGTTCGGCCTGCTGAT
CGGCAGCTTCCTCAACGTGGTGATCTACCGCGTGCCGAAGATGATGCAGCGCGAATCGGACAACTACGTCGCCGTCGAGA
GCGGCCGCGAGGCGCCCCACGCCGAGCGCTTCAACCTGATGGTGCCGCGCTCGGCCTGCCCGCACTGCGGCCACCAGATC
ACCGCGCTGGAAAACATTCCCCTGCTCAGCTGGCTCGTGCTGCGCGGCAAGTGCAGCGCCTGCCGGGCGCCGATCTCGCC
GCGCTACCCGGCCGTCGAACTGCTCACCGGCCTGCTGTCGGCCCTGCTGGTGTGGCGCTTCGGCAGCGGCTGGGCCGGCC
TGGCCGCGCTGTTCTTCCTGTACAGCCTGATCGCCATGACCTTCATCGACGCCGACACCCAGCTGCTGCCCGACGACCTG
ACCTATCCGCTGCTGTGGGCCGGCCTGCTGGTCAACCTGAACGGCACCTTCGTGCCGCTGCACGACGCCGTGGTCGGCGC
GGCGGCCGGCTATCTGGCCTTGTGGAGCATCTACTGGCTGTTCAAGCTGGCGACGGGAAAAGAGGGAATGGGGTATGGTG
ACTTCAAACTGCTGGCCGCGCTGGGCGCCTGGCTGGGCTGGGCCATGCTGCCGACCATCATCCTGTTGTCCTCGGTGGTC
GGCGCGCTGGTCGGCATCAGCCTGATCGTCTTCGCCCGCCACGGCCGCAACAACCCGATCCCCTTCGGCCCCTATTTGGC
CGCCGCCGGGCTGATCGCCATGTTGTACGGCAATTCGATTTCCGCCTTTACCCTCGGCCTGCTGGGCTGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (138-246)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (22-127)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	59.176	92.388	0.547
pilD	Vibrio campbellii strain DS40M4	55.431	92.388	0.512
pilD	Acinetobacter baumannii D1279779	50.73	94.81	0.481
pilD	Acinetobacter nosocomialis M2	50.365	94.81	0.478
pilD	Neisseria gonorrhoeae MS11	49.621	91.349	0.453