Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbB   Type   Machinery gene
Locus tag   P8596_RS22705 Genome accession   NZ_CP122397
Coordinates   4411843..4412220 (-) Length   125 a.a.
NCBI ID   WP_224522570.1    Uniprot ID   -
Organism   Rossellomorea sp. DA94     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4406843..4417220
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  P8596_RS22695 (P8596_22695) - 4408228..4411053 (+) 2826 WP_279725308.1 DEAD/DEAH box helicase -
  P8596_RS22700 (P8596_22700) - 4411645..4411818 (-) 174 WP_156477277.1 hypothetical protein -
  P8596_RS22705 (P8596_22705) ssbB 4411843..4412220 (-) 378 WP_224522570.1 single-stranded DNA-binding protein Machinery gene
  P8596_RS22710 (P8596_22710) - 4412490..4412930 (+) 441 WP_279725310.1 YwpF-like family protein -
  P8596_RS22715 (P8596_22715) - 4413028..4413348 (+) 321 WP_034765209.1 helix-turn-helix domain-containing protein -
  P8596_RS22720 (P8596_22720) - 4413383..4413520 (-) 138 WP_279725311.1 anti-repressor SinI family protein -
  P8596_RS22725 (P8596_22725) - 4414255..4414554 (-) 300 WP_279725313.1 hypothetical protein -
  P8596_RS22730 (P8596_22730) fabZ 4414719..4415150 (-) 432 WP_279725315.1 3-hydroxyacyl-ACP dehydratase FabZ -
  P8596_RS22735 (P8596_22735) - 4415455..4415730 (-) 276 WP_279725317.1 DNA-directed RNA polymerase subunit beta -
  P8596_RS22740 (P8596_22740) - 4415745..4416587 (-) 843 WP_279725318.1 flagellar hook-basal body protein -

Sequence

Protein


Download         Length: 125 a.a.        Molecular weight: 14135.12 Da        Isoelectric Point: 9.4662

>NTDB_id=815366 P8596_RS22705 WP_224522570.1 4411843..4412220(-) (ssbB) [Rossellomorea sp. DA94]
MINQVTLVGRLTKDPEARKTMEGKSVLSVTIAVNRPYKNQQGQIDADFVLCTIWNRAAENTEKYCRKGSVVGVTGRIQTR
YFENDQGKRTYITEVVAENIRFLDSKQGSPVTPEPSKKEPIELPF

Nucleotide


Download         Length: 378 bp        

>NTDB_id=815366 P8596_RS22705 WP_224522570.1 4411843..4412220(-) (ssbB) [Rossellomorea sp. DA94]
GTGATCAACCAAGTGACCCTGGTGGGAAGACTGACGAAAGACCCTGAAGCGAGAAAAACGATGGAAGGAAAATCAGTACT
TAGCGTGACGATTGCCGTGAACCGGCCATACAAAAACCAGCAAGGTCAGATCGATGCCGACTTTGTACTCTGTACGATAT
GGAACCGTGCAGCGGAAAATACGGAGAAATACTGCAGGAAGGGTTCCGTCGTCGGGGTGACGGGACGTATCCAGACACGT
TACTTTGAAAACGATCAAGGAAAGCGCACGTATATCACAGAAGTCGTCGCTGAAAACATCCGGTTCCTGGACAGTAAGCA
GGGGTCCCCAGTGACACCTGAACCAAGCAAGAAGGAACCAATCGAGTTGCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

84.8

0.504
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.774

84.8

0.456
  ssbB/cilA Streptococcus pneumoniae TIGR4

41.667

100

0.44
  ssbB/cilA Streptococcus pneumoniae D39

40.909

100

0.432
  ssbB/cilA Streptococcus pneumoniae Rx1

40.909

100

0.432
  ssbB/cilA Streptococcus pneumoniae R6

40.909

100

0.432
  ssbB/cilA Streptococcus mitis SK321

40.909

100

0.432
  ssb Latilactobacillus sakei subsp. sakei 23K

50.943

84.8

0.432
  ssbB/cilA Streptococcus mitis NCTC 12261

40.152

100

0.424
  ssbA Streptococcus mutans UA159

39.394

100

0.416
  ssbB Streptococcus sobrinus strain NIDR 6715-7

45.283

84.8

0.384