Detailed information
Bioinformatically predicted
Overview
| Name | comEA | Type | Machinery gene |
| Locus tag | M2042_RS04525 | Genome accession | NZ_AP023187 |
| Coordinates | 966469..966753 (+) | Length | 94 a.a. |
| NCBI ID | WP_031777211.1 | Uniprot ID | A0AAW6ZWA9 |
| Organism | Vibrio alginolyticus strain HLBS-07 | ||
| Function | dsDNA binding (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 961469..971753
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| M2042_RS04515 (HLBS07_08820) | - | 963880..964152 (+) | 273 | WP_005382341.1 | HU family DNA-binding protein | - |
| M2042_RS04520 (HLBS07_08830) | ppiD | 964354..966213 (+) | 1860 | WP_104978918.1 | peptidylprolyl isomerase | - |
| M2042_RS04525 (HLBS07_08840) | comEA | 966469..966753 (+) | 285 | WP_031777211.1 | helix-hairpin-helix domain-containing protein | Machinery gene |
| M2042_RS04530 (HLBS07_08850) | rrtA | 966853..967404 (-) | 552 | WP_248524879.1 | rhombosortase | - |
| M2042_RS04535 (HLBS07_08860) | - | 967408..968022 (+) | 615 | WP_171344886.1 | DTW domain-containing protein | - |
| M2042_RS04540 (HLBS07_08870) | - | 968029..969351 (-) | 1323 | WP_115385831.1 | anti-phage deoxyguanosine triphosphatase | - |
| M2042_RS04545 (HLBS07_08890) | yfbR | 969367..969951 (-) | 585 | WP_062730721.1 | 5'-deoxynucleotidase | - |
| M2042_RS04550 (HLBS07_08900) | - | 970042..971256 (-) | 1215 | WP_005384283.1 | pyridoxal phosphate-dependent aminotransferase | - |
Sequence
Protein
Download Length: 94 a.a. Molecular weight: 10336.96 Da Isoelectric Point: 5.1423
>NTDB_id=81529 M2042_RS04525 WP_031777211.1 966469..966753(+) (comEA) [Vibrio alginolyticus strain HLBS-07]
MKWILTLCLFVFAPFSMAADSATDKYEGIEITVNINTATAEEIATMLKGIGEKKAQSIVDYREEHGPFKTAADLKSVKGI
GEATVKKNEDRILL
MKWILTLCLFVFAPFSMAADSATDKYEGIEITVNINTATAEEIATMLKGIGEKKAQSIVDYREEHGPFKTAADLKSVKGI
GEATVKKNEDRILL
Nucleotide
Download Length: 285 bp
>NTDB_id=81529 M2042_RS04525 WP_031777211.1 966469..966753(+) (comEA) [Vibrio alginolyticus strain HLBS-07]
ATGAAATGGATTTTGACATTGTGCTTATTTGTTTTTGCACCTTTTAGCATGGCTGCGGATTCAGCCACTGACAAATATGA
AGGAATTGAAATTACTGTAAATATCAACACGGCCACTGCTGAAGAAATTGCGACCATGTTGAAAGGTATAGGTGAGAAGA
AAGCGCAGAGTATAGTGGACTACCGCGAGGAACATGGCCCTTTTAAAACGGCAGCAGATTTGAAGAGCGTAAAAGGCATA
GGTGAAGCGACAGTTAAGAAAAACGAAGACCGCATTTTACTGTAG
ATGAAATGGATTTTGACATTGTGCTTATTTGTTTTTGCACCTTTTAGCATGGCTGCGGATTCAGCCACTGACAAATATGA
AGGAATTGAAATTACTGTAAATATCAACACGGCCACTGCTGAAGAAATTGCGACCATGTTGAAAGGTATAGGTGAGAAGA
AAGCGCAGAGTATAGTGGACTACCGCGAGGAACATGGCCCTTTTAAAACGGCAGCAGATTTGAAGAGCGTAAAAGGCATA
GGTGAAGCGACAGTTAAGAAAAACGAAGACCGCATTTTACTGTAG
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comEA | Vibrio parahaemolyticus RIMD 2210633 |
88.298 |
100 |
0.883 |
| comEA | Vibrio campbellii strain DS40M4 |
75.789 |
100 |
0.766 |
| comEA | Vibrio cholerae C6706 |
60.87 |
97.872 |
0.596 |
| comEA | Vibrio cholerae strain A1552 |
60.87 |
97.872 |
0.596 |
| comEA/comE1 | Glaesserella parasuis strain SC1401 |
50.617 |
86.17 |
0.436 |
| comE1/comEA | Haemophilus influenzae Rd KW20 |
59.677 |
65.957 |
0.394 |
| comEA | Legionella pneumophila str. Paris |
36.842 |
100 |
0.372 |
| comEA | Legionella pneumophila strain ERS1305867 |
36.842 |
100 |
0.372 |
| comE | Neisseria gonorrhoeae MS11 |
37.778 |
95.745 |
0.362 |
| comE | Neisseria gonorrhoeae MS11 |
37.778 |
95.745 |
0.362 |
| comE | Neisseria gonorrhoeae MS11 |
37.778 |
95.745 |
0.362 |
| comE | Neisseria gonorrhoeae MS11 |
37.778 |
95.745 |
0.362 |
| comEA/celA/cilE | Streptococcus pneumoniae TIGR4 |
38.202 |
94.681 |
0.362 |