Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilU   Type   Machinery gene
Locus tag   QBS04_RS17300 Genome accession   NZ_CP121854
Coordinates   3673078..3674187 (-) Length   369 a.a.
NCBI ID   WP_005340356.1    Uniprot ID   -
Organism   Aeromonas veronii strain ANYA 13997     
Function   type IV pilus retraction (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3668078..3679187
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS04_RS17270 - 3668533..3669540 (-) 1008 WP_005340374.1 Fe(3+) ABC transporter substrate-binding protein -
  QBS04_RS17275 glnK 3669799..3670137 (-) 339 WP_005341406.1 P-II family nitrogen regulator -
  QBS04_RS17280 arfB 3670339..3670755 (+) 417 WP_019445599.1 alternative ribosome rescue aminoacyl-tRNA hydrolase ArfB -
  QBS04_RS17285 - 3670787..3671278 (+) 492 WP_279465306.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  QBS04_RS17290 - 3671637..3672062 (-) 426 WP_005340360.1 hypothetical protein -
  QBS04_RS17295 yaaA 3672257..3673030 (-) 774 WP_279465307.1 peroxide stress protein YaaA -
  QBS04_RS17300 pilU 3673078..3674187 (-) 1110 WP_005340356.1 type IVa pilus ATPase TapU Machinery gene
  QBS04_RS17305 pilT 3674216..3675250 (-) 1035 WP_005340354.1 type IVa pilus ATPase TapT Machinery gene
  QBS04_RS17310 - 3675290..3675991 (+) 702 WP_139441948.1 YggS family pyridoxal phosphate-dependent enzyme -
  QBS04_RS17315 proC 3676134..3676958 (+) 825 WP_279465308.1 pyrroline-5-carboxylate reductase -
  QBS04_RS17320 - 3676970..3677521 (+) 552 WP_047436998.1 YggT family protein -
  QBS04_RS17325 yggU 3677521..3677823 (+) 303 WP_005340341.1 DUF167 family protein YggU -
  QBS04_RS17330 - 3677867..3678286 (+) 420 WP_033135536.1 DUF4426 domain-containing protein -

Sequence

Protein


Download         Length: 369 a.a.        Molecular weight: 41076.12 Da        Isoelectric Point: 6.5043

>NTDB_id=814805 QBS04_RS17300 WP_005340356.1 3673078..3674187(-) (pilU) [Aeromonas veronii strain ANYA 13997]
MNLDDLLSELVERKGSDLFVTVGSPPTLKVNGHLVSLGGEALDKKGALTLVRDTLSSDHFERYIRTKEANYAIYREALGR
FRVSAFWQQELPGMVVRRIETRIPTFEDLQLPKILQEVAMAKRGLVLFVGATGAGKSTTQAAMIGYRNQHADGHILTVED
PVEFVHQHGRSLVTQREVGIDTESFDVALKSSLRQAPDVILIGEIRSQETMEFALQFAETGHLCLATLHANNANQALDRI
LHLVPQDKHRQFLFDLSFNLKAIVAQQLVPSMDGKRRCAAFEILLNTPLITDIIRKGEMHRLKEVMTKSTELGMQTFDQA
LFSLFCAGQIGYSEALAHADSANDLRLLIKLSGRERLGTGTLDNVTLDE

Nucleotide


Download         Length: 1110 bp        

>NTDB_id=814805 QBS04_RS17300 WP_005340356.1 3673078..3674187(-) (pilU) [Aeromonas veronii strain ANYA 13997]
ATGAATCTGGATGATCTGCTAAGCGAACTGGTCGAACGAAAGGGCTCGGATCTGTTTGTGACGGTGGGCTCGCCGCCCAC
CCTCAAGGTAAATGGCCATCTGGTGTCGCTGGGGGGGGAGGCGCTCGACAAGAAGGGGGCGCTGACGCTGGTCAGGGATA
CCCTCAGCAGCGATCACTTCGAGCGTTATATCCGCACCAAGGAGGCCAACTACGCGATTTATCGCGAGGCACTTGGCCGT
TTTCGGGTCAGCGCCTTCTGGCAGCAGGAGCTGCCCGGTATGGTGGTGCGGCGTATCGAGACCCGCATTCCCACCTTTGA
AGATCTGCAGCTACCCAAGATCCTGCAAGAGGTGGCGATGGCCAAGCGGGGACTGGTGCTGTTTGTCGGCGCCACCGGGG
CGGGCAAATCGACTACCCAGGCGGCGATGATCGGCTATCGCAACCAGCATGCCGATGGTCATATTCTGACGGTAGAAGAT
CCGGTGGAGTTCGTTCATCAGCATGGTCGTAGTCTGGTGACCCAGCGAGAGGTGGGGATCGACACAGAGTCGTTCGATGT
GGCGCTGAAAAGCTCGCTGCGTCAGGCGCCGGATGTGATCCTGATCGGCGAGATCCGAAGTCAGGAGACCATGGAGTTTG
CCCTGCAGTTCGCCGAGACAGGCCACCTTTGTCTCGCCACTTTGCATGCCAACAATGCCAACCAGGCGCTGGATCGCATC
CTCCATCTGGTGCCGCAAGACAAACACCGCCAGTTCCTGTTCGATCTCTCTTTCAACCTCAAGGCCATCGTCGCCCAGCA
GCTGGTGCCGAGTATGGATGGCAAGCGGCGCTGCGCTGCGTTCGAGATCCTGCTCAATACCCCGCTCATCACCGACATCA
TCCGCAAGGGGGAGATGCATCGCCTCAAGGAGGTGATGACCAAATCGACCGAGCTGGGTATGCAGACCTTCGATCAGGCG
CTCTTCAGCCTGTTCTGCGCCGGCCAGATTGGCTACAGTGAGGCCCTCGCCCACGCCGACTCTGCCAACGACCTGCGACT
GCTGATCAAGCTCTCCGGTCGCGAGCGGCTCGGCACCGGCACGCTGGACAATGTGACGCTGGATGAATGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(113-270)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilU Vibrio cholerae strain A1552

60.326

99.729

0.602
  pilU Pseudomonas stutzeri DSM 10701

60.399

95.122

0.575
  pilU Acinetobacter baylyi ADP1

57.224

95.664

0.547
  pilT Legionella pneumophila strain Lp02

40.816

92.954

0.379
  pilT Legionella pneumophila strain ERS1305867

40.816

92.954

0.379
  pilT Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

39.823

91.87

0.366
  pilT Acinetobacter baylyi ADP1

39.296

92.412

0.363
  pilT Vibrio cholerae strain A1552

39.82

90.515

0.36
  pilT Vibrio cholerae O1 biovar El Tor strain E7946

39.82

90.515

0.36