Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QBS04_RS01080 Genome accession   NZ_CP121854
Coordinates   214672..215913 (-) Length   413 a.a.
NCBI ID   WP_005355091.1    Uniprot ID   A0A2T4MY12
Organism   Aeromonas veronii strain ANYA 13997     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 209672..220913
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS04_RS01055 mutT 211664..212068 (+) 405 WP_107684321.1 8-oxo-dGTP diphosphatase MutT -
  QBS04_RS01060 yacG 212146..212340 (-) 195 WP_005336142.1 DNA gyrase inhibitor YacG -
  QBS04_RS01065 zapD 212350..213072 (-) 723 WP_005336141.1 cell division protein ZapD -
  QBS04_RS01070 coaE 213110..213724 (-) 615 WP_107684319.1 dephospho-CoA kinase -
  QBS04_RS01075 pilD 213738..214610 (-) 873 WP_107684318.1 A24 family peptidase Machinery gene
  QBS04_RS01080 pilC 214672..215913 (-) 1242 WP_005355091.1 type II secretion system F family protein Machinery gene
  QBS04_RS01085 pilB 216153..217859 (-) 1707 WP_279465677.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  QBS04_RS01090 tapA 217861..218343 (-) 483 WP_202004473.1 type IVa pilus major pilin TapA -
  QBS04_RS01095 nadC 218672..219547 (-) 876 WP_219594802.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QBS04_RS01100 - 219551..220021 (-) 471 WP_219594801.1 retropepsin-like aspartic protease -
  QBS04_RS01105 ampD 220152..220727 (+) 576 WP_279465678.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45441.57 Da        Isoelectric Point: 9.7221

>NTDB_id=814787 QBS04_RS01080 WP_005355091.1 214672..215913(-) (pilC) [Aeromonas veronii strain ANYA 13997]
MATLTKKNNAPKKVFAFRWHGVNRKGQKVSGELQADSINTVKTELRKQGVNVTKVAKKSQGLFSKGGAKIKPMDIAIVSR
QITTMLSAGVPLVQSLQIIARSHEKASMRELMGQIAADVETGTPMSEALRRHPLYFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPVFTQFVIGISRFMQNWWYVFFGGTA
LGIFLYVRAWRASQKVKDNTDKFVLTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVIA
MYLPIFKLGEVVG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=814787 QBS04_RS01080 WP_005355091.1 214672..215913(-) (pilC) [Aeromonas veronii strain ANYA 13997]
ATGGCAACCCTAACGAAAAAGAACAATGCCCCCAAGAAAGTCTTCGCCTTCCGCTGGCACGGGGTAAATCGCAAGGGGCA
GAAGGTCTCCGGCGAGCTGCAGGCCGACAGCATCAACACCGTCAAGACCGAACTGCGCAAGCAGGGGGTCAACGTCACCA
AGGTGGCCAAGAAATCCCAGGGGCTCTTCTCCAAGGGAGGCGCCAAGATCAAACCGATGGATATCGCCATCGTCTCCCGT
CAGATCACCACCATGCTCTCCGCCGGCGTACCACTAGTACAGAGCCTGCAGATCATCGCCCGCAGCCACGAGAAAGCCTC
GATGCGCGAGCTGATGGGACAGATTGCCGCCGATGTGGAGACTGGCACCCCCATGTCGGAGGCACTGCGCCGCCATCCCC
TCTACTTTGATGATCTCTATTGCGATCTGGTGGAAGCCGGTGAGCAATCCGGTGCGCTGGAGACCATCTACGACCGTATC
GCCACCTATCGGGAAAAATCGGAAGCGCTCAAGTCGAAGATCAAAAAGGCGATGTTCTACCCCACCATGGTCATTCTGGT
CGCCATCGTGGTCACCTCCATCCTGCTGCTGTTCGTCATTCCGCAGTTCGAGGATATCTTCAAGAGCTTTGGTGCCGAGC
TGCCGGTGTTCACCCAGTTTGTTATCGGCATCTCCCGCTTTATGCAGAACTGGTGGTATGTCTTCTTTGGTGGCACCGCC
CTTGGCATCTTCCTCTATGTGCGGGCCTGGCGGGCCTCCCAGAAGGTGAAAGACAATACCGACAAGTTCGTCCTCACCAT
TCCGGTGGTCGGGATGATCCTGCACAAGGCGGCGATGGCCCGCTTTGCCCGCACCCTGTCGACCACCTTCTCCGCCGGTA
TTCCGCTGGTAGATGCGCTGATTTCGGCGGCTGGCGCCTCCGGCAACTATGTCTATCGCACCGCGGTAATGGCCATCCGC
AACGAGGTGGTGGCCGGTATGCAGATCAACGTGGCGATGCGCACCGTCGATCTCTTCCCCGACATGGTGATCCAGATGGT
GATGATCGGTGAGGAGTCCGGTGCCATCGATGATATGCTCTCCAAGGTCGCCACCATCTTCGAACAGGAGGTGGATGATC
TGGTCGATGGCCTCACCAGCCTGCTGGAACCCCTCATCATGGTGGTGCTCGGGGTGCTGGTCGGCGGCATGGTTATTGCC
ATGTACCTGCCCATCTTCAAGCTTGGCGAAGTGGTAGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T4MY12

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.323

95.884

0.55
  pilC Acinetobacter baumannii D1279779

53.75

96.852

0.521
  pilC Acinetobacter baylyi ADP1

52.393

96.126

0.504
  pilC Legionella pneumophila strain ERS1305867

50.985

98.305

0.501
  pilC Vibrio cholerae strain A1552

46.883

97.094

0.455
  pilC Vibrio campbellii strain DS40M4

45.792

97.821

0.448
  pilG Neisseria gonorrhoeae MS11

40.247

98.063

0.395
  pilG Neisseria meningitidis 44/76-A

40

98.063

0.392
  pilC Thermus thermophilus HB27

38

96.852

0.368