Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QBS04_RS01075 Genome accession   NZ_CP121854
Coordinates   213738..214610 (-) Length   290 a.a.
NCBI ID   WP_107684318.1    Uniprot ID   A0A2T4MXS2
Organism   Aeromonas veronii strain ANYA 13997     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 208738..219610
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS04_RS01050 secA 208759..211479 (+) 2721 WP_107684322.1 preprotein translocase subunit SecA -
  QBS04_RS01055 mutT 211664..212068 (+) 405 WP_107684321.1 8-oxo-dGTP diphosphatase MutT -
  QBS04_RS01060 yacG 212146..212340 (-) 195 WP_005336142.1 DNA gyrase inhibitor YacG -
  QBS04_RS01065 zapD 212350..213072 (-) 723 WP_005336141.1 cell division protein ZapD -
  QBS04_RS01070 coaE 213110..213724 (-) 615 WP_107684319.1 dephospho-CoA kinase -
  QBS04_RS01075 pilD 213738..214610 (-) 873 WP_107684318.1 A24 family peptidase Machinery gene
  QBS04_RS01080 pilC 214672..215913 (-) 1242 WP_005355091.1 type II secretion system F family protein Machinery gene
  QBS04_RS01085 pilB 216153..217859 (-) 1707 WP_279465677.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  QBS04_RS01090 tapA 217861..218343 (-) 483 WP_202004473.1 type IVa pilus major pilin TapA -
  QBS04_RS01095 nadC 218672..219547 (-) 876 WP_219594802.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 32228.51 Da        Isoelectric Point: 6.3694

>NTDB_id=814786 QBS04_RS01075 WP_107684318.1 213738..214610(-) (pilD) [Aeromonas veronii strain ANYA 13997]
MTLLLELAHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFTPDEEATAPECYNLMVPRSACPHCGHA
ITALENIPLLSWIWLKGRCRDCQAPISARYPLVELLTALLSVAVAMVITPGWSTLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTDKEGMGYGDFKLLAALGAWLGWQALPIILLLSSL
IGAVIGISLIALHKHHQGKPIPFGPYLAIAGWIALLWGDTITRWYLSTLL

Nucleotide


Download         Length: 873 bp        

>NTDB_id=814786 QBS04_RS01075 WP_107684318.1 213738..214610(-) (pilD) [Aeromonas veronii strain ANYA 13997]
ATGACACTTCTTCTCGAGCTGGCTCACAGCTTGCCCTGGCTCTACTTCTCGCTGGTTTTTCTCTTCTCCCTGATGATCGG
CAGCTTCCTTAACGTGGTCATCCACCGCTTGCCCATCATGCTGGAACGGGAGTGGCAGGCCGAATATCGCAGCTACTTCA
CCCCTGATGAGGAGGCCACTGCGCCAGAGTGCTACAACCTGATGGTGCCGCGCTCCGCATGCCCTCACTGTGGCCACGCC
ATCACTGCGCTGGAGAACATCCCGCTGTTGAGCTGGATCTGGCTCAAAGGGCGTTGCCGCGACTGTCAGGCCCCCATCTC
GGCCCGCTATCCGCTGGTAGAGCTGCTGACCGCCCTGCTCTCGGTGGCCGTTGCCATGGTCATAACGCCAGGCTGGAGCA
CACTGGCCGCCCTGCTGCTGACCTGGGTGCTGGTCGCCCTCACCTTCATCGATCTCGACAAAATGTTGCTGCCCGACCAG
CTCACCCTGCCACTGCTGTGGGGCGGGCTGCTGTTCAATCTGGCTGGTGGCTTCGTGCCGCTGGCGGATGCCGTGATCGG
TGCCATGGCGGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTCACTGACAAGGAGGGGATGGGCTATG
GCGACTTCAAGCTGCTGGCGGCGCTGGGCGCCTGGCTCGGTTGGCAGGCGCTGCCCATAATTCTGCTGCTCTCATCCCTG
ATCGGCGCAGTGATCGGCATCAGTCTGATCGCCTTGCACAAACACCATCAGGGCAAGCCCATCCCCTTCGGCCCCTACCT
CGCCATCGCGGGCTGGATCGCCCTGCTATGGGGCGATACCATCACCCGCTGGTATCTCTCTACCCTGCTTTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(139-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2T4MXS2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

59.441

98.621

0.586
  pilD Vibrio campbellii strain DS40M4

55.052

98.966

0.545
  pilD Acinetobacter nosocomialis M2

52.688

96.207

0.507
  pilD Acinetobacter baumannii D1279779

52.33

96.207

0.503
  pilD Neisseria gonorrhoeae MS11

50

93.103

0.466