Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QBS11_RS00995 Genome accession   NZ_CP121851
Coordinates   196476..197717 (-) Length   413 a.a.
NCBI ID   WP_005336136.1    Uniprot ID   A0A0T6QCE0
Organism   Aeromonas veronii strain ANYA 14022     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 191476..202717
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS11_RS00970 mutT 193468..193872 (+) 405 WP_042053534.1 8-oxo-dGTP diphosphatase MutT -
  QBS11_RS00975 yacG 193950..194144 (-) 195 WP_005336142.1 DNA gyrase inhibitor YacG -
  QBS11_RS00980 zapD 194154..194876 (-) 723 WP_005336141.1 cell division protein ZapD -
  QBS11_RS00985 coaE 194914..195528 (-) 615 WP_058058638.1 dephospho-CoA kinase -
  QBS11_RS00990 pilD 195542..196414 (-) 873 WP_058058639.1 A24 family peptidase Machinery gene
  QBS11_RS00995 pilC 196476..197717 (-) 1242 WP_005336136.1 type II secretion system F family protein Machinery gene
  QBS11_RS01000 pilB 197958..199664 (-) 1707 WP_005336134.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  QBS11_RS01005 tapA 199668..200108 (-) 441 WP_320606780.1 type IVa pilus major pilin TapA -
  QBS11_RS01010 nadC 200424..201287 (-) 864 WP_058057549.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QBS11_RS01015 - 201291..201761 (-) 471 WP_279491554.1 retropepsin-like aspartic protease -
  QBS11_RS01020 ampD 201892..202467 (+) 576 WP_058057550.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45427.55 Da        Isoelectric Point: 9.7221

>NTDB_id=814760 QBS11_RS00995 WP_005336136.1 196476..197717(-) (pilC) [Aeromonas veronii strain ANYA 14022]
MATLTKKNNAPKKVFAFRWHGVNRKGQKVSGELQADSINTVKTELRKQGVNVTKVAKKSQGLFSKGGAKIKPMDIAIVSR
QITTMLSAGVPLVQSLQIIARSHEKASMRELMGQIAADVETGTPMSEALRRHPLYFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPVFTQFVIGISRFMQNWWYVFFGGTA
LGIFLYVRAWRASQKVKDNTDKFVLTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVIA
MYLPIFKLGDVVG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=814760 QBS11_RS00995 WP_005336136.1 196476..197717(-) (pilC) [Aeromonas veronii strain ANYA 14022]
ATGGCAACCCTAACGAAAAAGAACAATGCCCCCAAGAAAGTCTTCGCCTTCCGCTGGCACGGGGTAAACCGCAAGGGGCA
GAAGGTCTCCGGCGAGCTGCAGGCCGACAGCATCAACACCGTCAAGACCGAACTGCGCAAGCAGGGGGTCAACGTCACCA
AGGTGGCCAAAAAATCCCAAGGGCTCTTCTCCAAGGGCGGCGCCAAGATCAAACCGATGGATATCGCCATCGTCTCCCGT
CAGATCACCACCATGCTCTCCGCCGGTGTACCGCTGGTACAGAGCCTGCAGATCATCGCCCGCAGTCACGAAAAAGCCTC
GATGCGCGAGCTGATGGGGCAGATTGCCGCCGATGTTGAGACCGGAACCCCCATGTCGGAGGCACTGCGCCGCCATCCTC
TCTATTTCGATGATCTCTACTGCGATCTGGTGGAAGCCGGTGAGCAATCCGGTGCACTGGAGACCATCTATGACCGTATT
GCCACTTACCGGGAAAAGTCGGAAGCGCTCAAGTCGAAGATCAAGAAGGCGATGTTCTACCCCACCATGGTCATTCTGGT
CGCCATCGTGGTGACCTCCATCCTGCTGCTGTTCGTCATTCCGCAGTTCGAGGATATCTTCAAGAGCTTTGGTGCCGAGC
TGCCTGTGTTCACCCAGTTTGTTATCGGCATCTCCCGCTTTATGCAGAACTGGTGGTATGTCTTCTTTGGTGGCACGGCC
CTTGGCATCTTCCTTTACGTGCGGGCCTGGCGGGCCTCCCAGAAGGTGAAAGACAATACCGACAAGTTCGTCCTCACCAT
TCCGGTGGTCGGAATGATCCTGCACAAGGCGGCGATGGCTCGCTTTGCACGCACCCTGTCGACCACCTTCTCCGCCGGTA
TCCCGCTGGTGGATGCGCTGATTTCGGCGGCAGGGGCCTCCGGCAACTATGTCTATCGCACCGCGGTGATGGCGATCCGC
AACGAGGTGGTGGCCGGTATGCAGATCAACGTTGCAATGCGCACCGTCGATCTCTTCCCCGACATGGTGATTCAGATGGT
GATGATCGGTGAGGAGTCCGGTGCCATCGATGATATGCTCTCCAAGGTCGCCACCATCTTCGAACAGGAGGTGGATGATC
TGGTCGATGGCCTCACCAGCCTGCTGGAACCCCTCATCATGGTGGTGCTCGGGGTGCTGGTCGGCGGCATGGTTATCGCC
ATGTACCTGCCCATCTTCAAGCTGGGCGACGTGGTAGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T6QCE0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.323

95.884

0.55
  pilC Acinetobacter baumannii D1279779

53.75

96.852

0.521
  pilC Acinetobacter baylyi ADP1

52.393

96.126

0.504
  pilC Legionella pneumophila strain ERS1305867

50.985

98.305

0.501
  pilC Vibrio cholerae strain A1552

46.883

97.094

0.455
  pilC Vibrio campbellii strain DS40M4

45.792

97.821

0.448
  pilG Neisseria gonorrhoeae MS11

40.247

98.063

0.395
  pilG Neisseria meningitidis 44/76-A

40

98.063

0.392
  pilC Thermus thermophilus HB27

38

96.852

0.368