Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QBS11_RS00990 Genome accession   NZ_CP121851
Coordinates   195542..196414 (-) Length   290 a.a.
NCBI ID   WP_058058639.1    Uniprot ID   -
Organism   Aeromonas veronii strain ANYA 14022     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 190542..201414
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS11_RS00965 secA 190673..193393 (+) 2721 WP_005336144.1 preprotein translocase subunit SecA -
  QBS11_RS00970 mutT 193468..193872 (+) 405 WP_042053534.1 8-oxo-dGTP diphosphatase MutT -
  QBS11_RS00975 yacG 193950..194144 (-) 195 WP_005336142.1 DNA gyrase inhibitor YacG -
  QBS11_RS00980 zapD 194154..194876 (-) 723 WP_005336141.1 cell division protein ZapD -
  QBS11_RS00985 coaE 194914..195528 (-) 615 WP_058058638.1 dephospho-CoA kinase -
  QBS11_RS00990 pilD 195542..196414 (-) 873 WP_058058639.1 A24 family peptidase Machinery gene
  QBS11_RS00995 pilC 196476..197717 (-) 1242 WP_005336136.1 type II secretion system F family protein Machinery gene
  QBS11_RS01000 pilB 197958..199664 (-) 1707 WP_005336134.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  QBS11_RS01005 tapA 199668..200108 (-) 441 WP_320606780.1 type IVa pilus major pilin TapA -
  QBS11_RS01010 nadC 200424..201287 (-) 864 WP_058057549.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 32116.37 Da        Isoelectric Point: 6.6856

>NTDB_id=814759 QBS11_RS00990 WP_058058639.1 195542..196414(-) (pilD) [Aeromonas veronii strain ANYA 14022]
MTLLLELAHGLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFSPDEEATAPERYNLMVPRSACPHCGHA
ITALENIPLLSWLWLKGHCRDCQAPISARYPLVELLTALLSVAVAMVITPGWGTLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIILLLSSL
VGAVIGISLIALHKHHQGKPIPFGPYLAIAGWIALLWGDTITRWYLSTLL

Nucleotide


Download         Length: 873 bp        

>NTDB_id=814759 QBS11_RS00990 WP_058058639.1 195542..196414(-) (pilD) [Aeromonas veronii strain ANYA 14022]
ATGACACTTCTTCTCGAGCTGGCTCACGGCTTGCCATGGCTCTACTTCTCGCTGGTTTTTCTCTTCTCCCTGATGATCGG
CAGCTTCCTTAACGTAGTGATCCACCGCTTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAATATCGCAGCTACTTTT
CCCCCGATGAGGAGGCCACTGCGCCAGAGCGCTACAACCTGATGGTCCCCCGCTCCGCATGCCCTCACTGTGGCCACGCC
ATCACTGCGCTGGAGAACATCCCGCTGTTGAGCTGGCTCTGGCTCAAAGGGCATTGCCGTGACTGTCAGGCCCCCATCTC
GGCCCGCTATCCGCTGGTAGAGCTGCTGACCGCCCTGCTCTCGGTGGCCGTTGCCATGGTCATAACGCCGGGCTGGGGCA
CACTGGCCGCCCTATTGCTGACCTGGGTGCTGGTCGCCCTCACCTTCATCGATCTCGACAAGATGTTGCTGCCCGACCAG
CTCACCCTGCCACTGCTGTGGGGCGGGCTGCTGTTCAATCTGGCTGGTGGTTTCGTGCCGCTGGCAGATGCCGTGATCGG
CGCCATGGCGGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCTTTCAAGCTGCTCACTGGCAAGGAGGGGATGGGCTATG
GCGACTTCAAGCTGCTGGCGGCGCTGGGCGCCTGGCTCGGTTGGCAGGCGCTGCCCATAATTCTGCTGCTCTCATCTCTG
GTCGGTGCCGTGATCGGCATCAGCCTGATCGCCTTGCACAAACATCATCAGGGCAAGCCCATCCCCTTCGGCCCCTACCT
CGCCATTGCGGGCTGGATCGCCCTGCTGTGGGGCGATACCATCACCCGCTGGTATCTCTCTACCCTGCTTTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(139-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

60.49

98.621

0.597
  pilD Vibrio campbellii strain DS40M4

56.098

98.966

0.555
  pilD Acinetobacter baumannii D1279779

54.478

92.414

0.503
  pilD Acinetobacter nosocomialis M2

54.478

92.414

0.503
  pilD Neisseria gonorrhoeae MS11

49.084

94.138

0.462