Detailed information    

insolico Bioinformatically predicted

Overview

Name   comE1/comEA   Type   Machinery gene
Locus tag   QBS03_RS16925 Genome accession   NZ_CP121846
Coordinates   3647070..3647390 (+) Length   106 a.a.
NCBI ID   WP_279486072.1    Uniprot ID   -
Organism   Aeromonas veronii strain ANYA 15110     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3642070..3652390
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS03_RS16910 yfbV 3642508..3642948 (-) 441 WP_005339116.1 terminus macrodomain insulation protein YfbV -
  QBS03_RS16915 - 3643253..3644455 (+) 1203 WP_005349210.1 acetate kinase -
  QBS03_RS16920 pta 3644511..3646691 (+) 2181 WP_005339119.1 phosphate acetyltransferase -
  QBS03_RS16925 comE1/comEA 3647070..3647390 (+) 321 WP_279486072.1 ComEA family DNA-binding protein Machinery gene
  QBS03_RS16930 galU 3647486..3648397 (+) 912 WP_100654493.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  QBS03_RS16935 - 3648611..3650008 (+) 1398 WP_021231963.1 peptide MFS transporter -
  QBS03_RS16940 - 3650083..3651054 (-) 972 WP_108614137.1 response regulator -
  QBS03_RS16945 - 3651294..3651992 (+) 699 WP_005349201.1 DnaT-like ssDNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11258.26 Da        Isoelectric Point: 9.9853

>NTDB_id=814694 QBS03_RS16925 WP_279486072.1 3647070..3647390(+) (comE1/comEA) [Aeromonas veronii strain ANYA 15110]
MLMKKLSAVMLLACLPLFSQPVLAVDKAAPKQTTTSAVAKESGKLNINTATLAELTSLKGIGDKKAQAIVDYREKQGKFT
SVDQLADVNGIGPATLEANRDMIIVK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=814694 QBS03_RS16925 WP_279486072.1 3647070..3647390(+) (comE1/comEA) [Aeromonas veronii strain ANYA 15110]
ATGCTGATGAAGAAGCTCTCTGCTGTCATGCTGCTGGCCTGCTTGCCCCTGTTCAGCCAACCTGTGCTGGCCGTAGATAA
GGCAGCGCCCAAGCAAACAACCACGAGCGCGGTTGCCAAGGAGTCCGGCAAGCTGAATATCAATACCGCCACCCTTGCCG
AACTCACCAGCCTGAAAGGGATTGGTGACAAGAAGGCACAAGCCATCGTCGACTATCGGGAAAAACAGGGAAAGTTCACC
TCGGTCGATCAGCTGGCGGATGTCAATGGCATTGGCCCGGCCACGCTGGAAGCCAACAGGGACATGATAATAGTCAAATA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(42-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comE1/comEA Haemophilus influenzae Rd KW20

48.673

100

0.519
  comEA/comE1 Glaesserella parasuis strain SC1401

46.018

100

0.491
  comEA Vibrio cholerae C6706

45.631

97.17

0.443
  comEA Vibrio cholerae strain A1552

45.631

97.17

0.443
  comEA Vibrio parahaemolyticus RIMD 2210633

43.299

91.509

0.396
  comEA Legionella pneumophila strain ERS1305867

39.394

93.396

0.368
  comEA Legionella pneumophila str. Paris

39.394

93.396

0.368
  comEA/celA/cilE Streptococcus pneumoniae D39

46.988

78.302

0.368
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

46.988

78.302

0.368
  comEA/celA/cilE Streptococcus mitis NCTC 12261

46.988

78.302

0.368
  comEA/celA/cilE Streptococcus pneumoniae Rx1

46.988

78.302

0.368
  comEA/celA/cilE Streptococcus pneumoniae R6

46.988

78.302

0.368