Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | QBS37_RS07845 | Genome accession | NZ_CP121845 |
| Coordinates | 1568642..1569883 (-) | Length | 413 a.a. |
| NCBI ID | WP_005336136.1 | Uniprot ID | A0A0T6QCE0 |
| Organism | Aeromonas veronii strain ANYA 15694 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 1563642..1574883
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| QBS37_RS07820 | mutT | 1565634..1566038 (+) | 405 | WP_107684321.1 | 8-oxo-dGTP diphosphatase MutT | - |
| QBS37_RS07825 | yacG | 1566116..1566310 (-) | 195 | WP_005336142.1 | DNA gyrase inhibitor YacG | - |
| QBS37_RS07830 | zapD | 1566320..1567042 (-) | 723 | WP_005336141.1 | cell division protein ZapD | - |
| QBS37_RS07835 | coaE | 1567080..1567694 (-) | 615 | WP_139730939.1 | dephospho-CoA kinase | - |
| QBS37_RS07840 | pilD | 1567708..1568580 (-) | 873 | WP_139730940.1 | A24 family peptidase | Machinery gene |
| QBS37_RS07845 | pilC | 1568642..1569883 (-) | 1242 | WP_005336136.1 | type II secretion system F family protein | Machinery gene |
| QBS37_RS07850 | pilB | 1570123..1571829 (-) | 1707 | WP_279476731.1 | PilB family type IVa pilus assembly ATPase TapB | Machinery gene |
| QBS37_RS07855 | - | 1571833..1572297 (-) | 465 | WP_107684404.1 | prepilin-type N-terminal cleavage/methylation domain-containing protein | - |
| QBS37_RS07860 | nadC | 1572626..1573489 (-) | 864 | WP_139730941.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| QBS37_RS07865 | - | 1573493..1573963 (-) | 471 | WP_139730942.1 | retropepsin-like aspartic protease | - |
| QBS37_RS07870 | ampD | 1574094..1574669 (+) | 576 | WP_139730943.1 | 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD | - |
Sequence
Protein
Download Length: 413 a.a. Molecular weight: 45427.55 Da Isoelectric Point: 9.7221
>NTDB_id=814661 QBS37_RS07845 WP_005336136.1 1568642..1569883(-) (pilC) [Aeromonas veronii strain ANYA 15694]
MATLTKKNNAPKKVFAFRWHGVNRKGQKVSGELQADSINTVKTELRKQGVNVTKVAKKSQGLFSKGGAKIKPMDIAIVSR
QITTMLSAGVPLVQSLQIIARSHEKASMRELMGQIAADVETGTPMSEALRRHPLYFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPVFTQFVIGISRFMQNWWYVFFGGTA
LGIFLYVRAWRASQKVKDNTDKFVLTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVIA
MYLPIFKLGDVVG
MATLTKKNNAPKKVFAFRWHGVNRKGQKVSGELQADSINTVKTELRKQGVNVTKVAKKSQGLFSKGGAKIKPMDIAIVSR
QITTMLSAGVPLVQSLQIIARSHEKASMRELMGQIAADVETGTPMSEALRRHPLYFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPVFTQFVIGISRFMQNWWYVFFGGTA
LGIFLYVRAWRASQKVKDNTDKFVLTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVIA
MYLPIFKLGDVVG
Nucleotide
Download Length: 1242 bp
>NTDB_id=814661 QBS37_RS07845 WP_005336136.1 1568642..1569883(-) (pilC) [Aeromonas veronii strain ANYA 15694]
ATGGCAACCCTAACGAAAAAGAACAATGCCCCCAAGAAAGTCTTCGCCTTCCGCTGGCACGGGGTTAATCGCAAGGGGCA
GAAGGTCTCCGGCGAGCTGCAGGCCGACAGCATCAACACCGTCAAGACCGAACTGCGCAAGCAGGGGGTCAACGTCACCA
AGGTAGCCAAGAAATCCCAGGGGCTCTTCTCCAAAGGAGGCGCCAAGATCAAACCGATGGATATCGCCATCGTCTCACGC
CAGATCACCACCATGCTCTCCGCCGGCGTACCACTGGTGCAGAGCCTGCAGATCATCGCCCGCAGCCACGAGAAAGCCTC
GATGCGAGAGCTGATGGGGCAGATTGCCGCCGATGTGGAGACTGGTACCCCCATGTCGGAGGCGCTGCGTCGCCATCCCC
TCTACTTTGATGATCTCTATTGCGATCTGGTGGAGGCCGGTGAGCAATCCGGTGCACTGGAGACCATCTACGACCGTATC
GCCACCTATCGGGAAAAGTCGGAAGCGCTCAAGTCGAAGATCAAGAAGGCGATGTTCTACCCCACCATGGTCATTCTGGT
CGCCATCGTGGTCACCTCAATCCTGCTGCTGTTCGTCATTCCGCAGTTCGAGGATATCTTCAAGAGCTTCGGCGCCGAGC
TGCCGGTGTTCACCCAGTTTGTTATCGGCATCTCCCGCTTTATGCAGAACTGGTGGTATGTCTTCTTTGGTGGCACCGCC
CTTGGTATCTTCCTTTACGTGCGGGCCTGGCGGGCCTCCCAGAAGGTAAAAGACAACACCGACAAGTTTGTACTCACCAT
TCCGGTGGTCGGGATGATCCTGCACAAGGCGGCGATGGCTCGCTTTGCCCGCACCCTGTCGACCACCTTCTCCGCCGGTA
TCCCGCTGGTGGATGCGCTTATTTCGGCGGCTGGGGCCTCGGGTAACTATGTCTATCGCACCGCTGTCATGGCCATCCGC
AACGAGGTGGTGGCCGGTATGCAGATCAACGTTGCAATGCGCACCGTCGATCTCTTCCCCGACATGGTGATCCAGATGGT
GATGATCGGTGAGGAGTCCGGCGCCATCGATGATATGCTCTCCAAGGTCGCCACCATCTTCGAACAGGAGGTGGATGATC
TGGTCGATGGCCTCACCAGCCTGCTGGAACCCCTCATCATGGTGGTGCTCGGGGTGCTGGTCGGCGGTATGGTTATTGCC
ATGTACCTGCCCATCTTCAAGCTTGGCGACGTGGTAGGCTGA
ATGGCAACCCTAACGAAAAAGAACAATGCCCCCAAGAAAGTCTTCGCCTTCCGCTGGCACGGGGTTAATCGCAAGGGGCA
GAAGGTCTCCGGCGAGCTGCAGGCCGACAGCATCAACACCGTCAAGACCGAACTGCGCAAGCAGGGGGTCAACGTCACCA
AGGTAGCCAAGAAATCCCAGGGGCTCTTCTCCAAAGGAGGCGCCAAGATCAAACCGATGGATATCGCCATCGTCTCACGC
CAGATCACCACCATGCTCTCCGCCGGCGTACCACTGGTGCAGAGCCTGCAGATCATCGCCCGCAGCCACGAGAAAGCCTC
GATGCGAGAGCTGATGGGGCAGATTGCCGCCGATGTGGAGACTGGTACCCCCATGTCGGAGGCGCTGCGTCGCCATCCCC
TCTACTTTGATGATCTCTATTGCGATCTGGTGGAGGCCGGTGAGCAATCCGGTGCACTGGAGACCATCTACGACCGTATC
GCCACCTATCGGGAAAAGTCGGAAGCGCTCAAGTCGAAGATCAAGAAGGCGATGTTCTACCCCACCATGGTCATTCTGGT
CGCCATCGTGGTCACCTCAATCCTGCTGCTGTTCGTCATTCCGCAGTTCGAGGATATCTTCAAGAGCTTCGGCGCCGAGC
TGCCGGTGTTCACCCAGTTTGTTATCGGCATCTCCCGCTTTATGCAGAACTGGTGGTATGTCTTCTTTGGTGGCACCGCC
CTTGGTATCTTCCTTTACGTGCGGGCCTGGCGGGCCTCCCAGAAGGTAAAAGACAACACCGACAAGTTTGTACTCACCAT
TCCGGTGGTCGGGATGATCCTGCACAAGGCGGCGATGGCTCGCTTTGCCCGCACCCTGTCGACCACCTTCTCCGCCGGTA
TCCCGCTGGTGGATGCGCTTATTTCGGCGGCTGGGGCCTCGGGTAACTATGTCTATCGCACCGCTGTCATGGCCATCCGC
AACGAGGTGGTGGCCGGTATGCAGATCAACGTTGCAATGCGCACCGTCGATCTCTTCCCCGACATGGTGATCCAGATGGT
GATGATCGGTGAGGAGTCCGGCGCCATCGATGATATGCTCTCCAAGGTCGCCACCATCTTCGAACAGGAGGTGGATGATC
TGGTCGATGGCCTCACCAGCCTGCTGGAACCCCTCATCATGGTGGTGCTCGGGGTGCTGGTCGGCGGTATGGTTATTGCC
ATGTACCTGCCCATCTTCAAGCTTGGCGACGTGGTAGGCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Pseudomonas stutzeri DSM 10701 |
57.323 |
95.884 |
0.55 |
| pilC | Acinetobacter baumannii D1279779 |
53.75 |
96.852 |
0.521 |
| pilC | Acinetobacter baylyi ADP1 |
52.393 |
96.126 |
0.504 |
| pilC | Legionella pneumophila strain ERS1305867 |
50.985 |
98.305 |
0.501 |
| pilC | Vibrio cholerae strain A1552 |
46.883 |
97.094 |
0.455 |
| pilC | Vibrio campbellii strain DS40M4 |
45.792 |
97.821 |
0.448 |
| pilG | Neisseria gonorrhoeae MS11 |
40.247 |
98.063 |
0.395 |
| pilG | Neisseria meningitidis 44/76-A |
40 |
98.063 |
0.392 |
| pilC | Thermus thermophilus HB27 |
38 |
96.852 |
0.368 |