Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QBS37_RS07840 Genome accession   NZ_CP121845
Coordinates   1567708..1568580 (-) Length   290 a.a.
NCBI ID   WP_139730940.1    Uniprot ID   -
Organism   Aeromonas veronii strain ANYA 15694     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1562708..1573580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS37_RS07815 secA 1562729..1565449 (+) 2721 WP_279476730.1 preprotein translocase subunit SecA -
  QBS37_RS07820 mutT 1565634..1566038 (+) 405 WP_107684321.1 8-oxo-dGTP diphosphatase MutT -
  QBS37_RS07825 yacG 1566116..1566310 (-) 195 WP_005336142.1 DNA gyrase inhibitor YacG -
  QBS37_RS07830 zapD 1566320..1567042 (-) 723 WP_005336141.1 cell division protein ZapD -
  QBS37_RS07835 coaE 1567080..1567694 (-) 615 WP_139730939.1 dephospho-CoA kinase -
  QBS37_RS07840 pilD 1567708..1568580 (-) 873 WP_139730940.1 A24 family peptidase Machinery gene
  QBS37_RS07845 pilC 1568642..1569883 (-) 1242 WP_005336136.1 type II secretion system F family protein Machinery gene
  QBS37_RS07850 pilB 1570123..1571829 (-) 1707 WP_279476731.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  QBS37_RS07855 - 1571833..1572297 (-) 465 WP_107684404.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  QBS37_RS07860 nadC 1572626..1573489 (-) 864 WP_139730941.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 32141.38 Da        Isoelectric Point: 6.5960

>NTDB_id=814660 QBS37_RS07840 WP_139730940.1 1567708..1568580(-) (pilD) [Aeromonas veronii strain ANYA 15694]
MTLLLELAHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYHGYFSTDEEATAPERYNLMVPRSACPHCGHA
ITALENIPLLSWLWLKGRCRDCQAPISARYPLVELLTALLSVAVAMVITPGWGTLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLASGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIILLLSSL
VGAVIGISLIALQKHHQGKPIPFGPYLAIAGWIALLWGDTITRWYLSTLL

Nucleotide


Download         Length: 873 bp        

>NTDB_id=814660 QBS37_RS07840 WP_139730940.1 1567708..1568580(-) (pilD) [Aeromonas veronii strain ANYA 15694]
ATGACACTTCTTCTCGAGCTGGCTCACAGCTTGCCCTGGCTCTATTTTTCGCTGGTTTTTCTTTTCTCCCTGATGATCGG
CAGCTTCCTTAACGTGGTCATCCACCGCTTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAATATCACGGCTACTTTT
CCACCGATGAGGAGGCCACTGCGCCAGAGCGCTACAACCTGATGGTCCCCCGCTCCGCATGTCCTCACTGTGGCCACGCC
ATCACTGCGCTGGAGAACATCCCGCTGTTGAGCTGGCTCTGGCTCAAAGGGCGTTGCCGCGACTGTCAGGCCCCCATCTC
GGCCCGCTATCCGCTGGTAGAGCTGCTGACCGCCCTGCTCTCGGTGGCCGTAGCAATGGTCATAACACCGGGCTGGGGCA
CACTGGCCGCCCTGTTGCTGACCTGGGTGCTGGTCGCCCTCACCTTCATCGATCTCGACAAGATGTTGCTGCCCGACCAG
CTCACCCTGCCACTGCTGTGGGGCGGGCTGCTGTTCAACCTGGCAAGTGGCTTCGTACCGCTGGCGGATGCCGTGATCGG
CGCCATGGCGGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTCACTGGCAAGGAGGGGATGGGCTATG
GCGACTTCAAGCTGCTAGCGGCGCTGGGCGCCTGGCTCGGTTGGCAGGCGCTGCCCATAATTCTGCTGCTCTCATCTCTG
GTCGGCGCCGTGATCGGCATCAGCCTGATCGCCTTGCAAAAACATCATCAGGGCAAGCCCATCCCCTTCGGCCCCTACCT
CGCCATCGCGGGCTGGATTGCGCTGCTATGGGGCGATACCATCACCCGCTGGTATCTCTCTACCCTGCTTTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(139-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

60.627

98.966

0.6
  pilD Vibrio campbellii strain DS40M4

56.098

98.966

0.555
  pilD Acinetobacter baumannii D1279779

53.237

95.862

0.51
  pilD Acinetobacter nosocomialis M2

53.237

95.862

0.51
  pilD Neisseria gonorrhoeae MS11

49.814

92.759

0.462