Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   QBS37_RS07850 Genome accession   NZ_CP121845
Coordinates   1570123..1571829 (-) Length   568 a.a.
NCBI ID   WP_279476731.1    Uniprot ID   -
Organism   Aeromonas veronii strain ANYA 15694     
Function   power the assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1565123..1576829
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS37_RS07820 mutT 1565634..1566038 (+) 405 WP_107684321.1 8-oxo-dGTP diphosphatase MutT -
  QBS37_RS07825 yacG 1566116..1566310 (-) 195 WP_005336142.1 DNA gyrase inhibitor YacG -
  QBS37_RS07830 zapD 1566320..1567042 (-) 723 WP_005336141.1 cell division protein ZapD -
  QBS37_RS07835 coaE 1567080..1567694 (-) 615 WP_139730939.1 dephospho-CoA kinase -
  QBS37_RS07840 pilD 1567708..1568580 (-) 873 WP_139730940.1 A24 family peptidase Machinery gene
  QBS37_RS07845 pilC 1568642..1569883 (-) 1242 WP_005336136.1 type II secretion system F family protein Machinery gene
  QBS37_RS07850 pilB 1570123..1571829 (-) 1707 WP_279476731.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  QBS37_RS07855 - 1571833..1572297 (-) 465 WP_107684404.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  QBS37_RS07860 nadC 1572626..1573489 (-) 864 WP_139730941.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QBS37_RS07865 - 1573493..1573963 (-) 471 WP_139730942.1 retropepsin-like aspartic protease -
  QBS37_RS07870 ampD 1574094..1574669 (+) 576 WP_139730943.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  QBS37_RS07875 pdhR 1574948..1575712 (+) 765 WP_005336127.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -

Sequence

Protein


Download         Length: 568 a.a.        Molecular weight: 62577.93 Da        Isoelectric Point: 5.3192

>NTDB_id=814662 QBS37_RS07850 WP_279476731.1 1570123..1571829(-) (pilB) [Aeromonas veronii strain ANYA 15694]
MTSSPNSGLALSLAVSSLISEEDSQRYLSQAKAQRKPFVTFLIENEILDSKALADFCELEYGVPLLDLAAFDLAEIPQKY
LNQKLIEKHHVLPIYTQGHTLYIAMSDPTNVSALEDFGFSFGLHTEALLVEENKLTAAIGKLLESENDALGMEDIDESEI
SDLEVSDENSRLDESVNTADDDAPIVKYINKILMDAIKRGASDLHFEPYEFKYRVRFRIDGILHEIATPPVNLSNRFSAR
LKVMARLDIAERRLPQDGRIKLKLSRNKSMDMRVNTLPTMWGEKIVIRLLDSSAARLNIEQLGFDDRQKAQYLRALSKPQ
GMILVTGPTGSGKTVSLYTGLNILNTTEVNISTAEDPVEINLPGVNQVQVNPKAGLTFASALRSFLRQDPDVVMVGEIRD
LETAEIAIKAAQTGHLVLSTLHTNSAAETLTRMMNMGVPAFNIASSVTLIMAQRLARKLCDHCKAPEVVPESELLELGFT
PQQLAAGLRLFKPVGCKECSGGYKGRVGIYEIMLMSENIAKLIMQGANSLQIAAIAQKEGMRTLRTSGLEKARLGVTSLA
EVNRVTTN

Nucleotide


Download         Length: 1707 bp        

>NTDB_id=814662 QBS37_RS07850 WP_279476731.1 1570123..1571829(-) (pilB) [Aeromonas veronii strain ANYA 15694]
ATGACCTCTAGCCCTAATAGCGGCCTGGCGTTAAGCTTGGCCGTCTCTTCACTGATCAGTGAAGAGGACTCTCAGCGCTA
TCTGAGCCAGGCCAAGGCTCAGCGCAAACCCTTTGTGACATTTCTGATAGAGAACGAGATCCTCGACAGCAAGGCGCTCG
CCGATTTTTGCGAGCTGGAGTATGGGGTACCTCTGCTGGATCTTGCCGCCTTCGACTTGGCCGAGATCCCGCAGAAGTAC
CTCAATCAGAAGCTGATTGAGAAGCACCACGTCCTGCCCATCTACACCCAGGGCCACACCCTCTATATCGCCATGTCGGA
CCCGACCAATGTCTCGGCGTTGGAGGACTTTGGCTTCAGCTTCGGCCTTCATACCGAGGCGCTGCTGGTGGAGGAGAACA
AACTCACCGCCGCCATCGGTAAGCTGCTGGAGAGCGAAAATGACGCCCTCGGCATGGAGGATATCGACGAGTCCGAGATT
TCTGATCTCGAAGTCTCCGACGAAAACAGTCGGCTGGACGAGAGCGTCAATACTGCCGATGACGATGCACCCATCGTCAA
GTACATCAACAAAATCCTGATGGATGCCATCAAGCGCGGTGCCTCCGACCTGCACTTCGAGCCCTATGAGTTCAAGTATC
GGGTGCGCTTTCGCATCGATGGCATTTTGCATGAAATTGCTACGCCGCCGGTCAACCTCTCCAACCGCTTCTCCGCCCGC
CTCAAGGTTATGGCACGGCTCGATATTGCCGAACGGCGGCTGCCACAGGATGGCCGCATCAAGTTGAAGTTGTCGCGCAA
CAAGTCGATGGATATGCGGGTCAACACCCTGCCCACCATGTGGGGGGAGAAGATCGTTATCCGTCTGCTCGACTCCTCGG
CGGCACGCCTCAATATCGAGCAACTCGGCTTTGATGACCGGCAGAAGGCCCAATACCTGCGTGCCCTCTCCAAACCACAG
GGGATGATCCTGGTGACCGGCCCCACCGGTTCGGGCAAGACGGTCTCGCTCTATACCGGCCTCAATATTCTCAACACTAC
CGAGGTAAACATCTCCACCGCCGAAGATCCGGTGGAGATCAACCTGCCCGGCGTCAATCAGGTGCAGGTCAACCCCAAGG
CGGGGCTCACTTTCGCCAGCGCCCTGCGCTCCTTCCTGCGGCAAGACCCGGATGTGGTGATGGTGGGTGAAATTCGCGAT
CTTGAAACCGCAGAGATTGCCATCAAGGCGGCGCAGACCGGTCACCTGGTGCTTTCGACCCTGCACACCAACTCCGCCGC
CGAGACCCTGACCCGGATGATGAACATGGGGGTACCGGCCTTCAACATCGCCTCCTCGGTGACCCTGATCATGGCCCAGC
GGTTGGCCCGCAAACTGTGCGACCACTGCAAAGCGCCGGAAGTGGTGCCGGAATCCGAACTGCTGGAGCTGGGCTTTACG
CCGCAGCAGCTGGCAGCCGGACTGCGACTGTTCAAACCGGTCGGTTGCAAGGAGTGTTCCGGCGGCTACAAGGGGCGGGT
CGGCATCTACGAAATCATGTTGATGTCGGAGAACATCGCCAAATTGATCATGCAGGGGGCCAACTCCCTGCAAATCGCCG
CGATCGCCCAGAAGGAGGGGATGCGCACCCTGCGCACCTCGGGGCTGGAGAAGGCCCGGCTCGGGGTCACCAGTCTGGCC
GAGGTCAACCGGGTCACCACCAACTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein E, N-terminal domain (MshEN)

(42-146)

Type II/IV secretion system protein (T2SSE)

(191-458)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Acinetobacter baumannii D1279779

55.986

100

0.56
  pilB Acinetobacter baylyi ADP1

55.789

100

0.56
  pilB Legionella pneumophila strain ERS1305867

54.867

99.472

0.546
  pilB Vibrio cholerae strain A1552

54.775

97.711

0.535
  pilB Vibrio campbellii strain DS40M4

52.669

98.944

0.521
  pilB Vibrio parahaemolyticus RIMD 2210633

51.596

99.296

0.512
  pilF Neisseria gonorrhoeae MS11

46.809

99.296

0.465
  pilB/pilB1 Synechocystis sp. PCC 6803

39.06

97.359

0.38
  pilF Thermus thermophilus HB27

40.53

92.958

0.377