Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QBS12_RS04235 Genome accession   NZ_CP121841
Coordinates   886784..888025 (-) Length   413 a.a.
NCBI ID   WP_111899845.1    Uniprot ID   -
Organism   Aeromonas veronii strain ANYA 18196     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 881784..893025
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS12_RS04210 mutT 883775..884179 (+) 405 WP_279464201.1 8-oxo-dGTP diphosphatase MutT -
  QBS12_RS04215 yacG 884258..884452 (-) 195 WP_005336142.1 DNA gyrase inhibitor YacG -
  QBS12_RS04220 zapD 884462..885184 (-) 723 WP_021231281.1 cell division protein ZapD -
  QBS12_RS04225 coaE 885222..885836 (-) 615 WP_279464202.1 dephospho-CoA kinase -
  QBS12_RS04230 pilD 885850..886722 (-) 873 WP_279464203.1 A24 family peptidase Machinery gene
  QBS12_RS04235 pilC 886784..888025 (-) 1242 WP_111899845.1 type II secretion system F family protein Machinery gene
  QBS12_RS04240 pilB 888266..889972 (-) 1707 WP_005336134.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  QBS12_RS04245 - 889982..890428 (-) 447 WP_236271771.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  QBS12_RS04250 nadC 890744..891607 (-) 864 WP_279464204.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QBS12_RS04255 - 891611..892081 (-) 471 WP_040068932.1 retropepsin-like aspartic protease -
  QBS12_RS04260 ampD 892212..892787 (+) 576 WP_069554218.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45428.53 Da        Isoelectric Point: 9.6071

>NTDB_id=814577 QBS12_RS04235 WP_111899845.1 886784..888025(-) (pilC) [Aeromonas veronii strain ANYA 18196]
MATLTKKNNAPKKVFAFRWHGVNRKGQKVSGELQADSINTVKTELRKQGVNVTKVAKKSQGLFSKGGAKIKPMDIAIVSR
QITTMLSAGVPLVQSLQIIARSHEKASMRELMGQIAADVETGTPMSEALRRHPLYFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPVFTQFVIGISRFMQDWWYVFFGGTA
LGIFLYVRAWRASQKVKDNTDKFVLTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVIA
MYLPIFKLGDVVG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=814577 QBS12_RS04235 WP_111899845.1 886784..888025(-) (pilC) [Aeromonas veronii strain ANYA 18196]
ATGGCAACCCTAACGAAAAAGAACAATGCCCCCAAGAAAGTCTTCGCCTTCCGCTGGCACGGGGTAAACCGCAAGGGGCA
GAAGGTCTCCGGCGAGCTGCAGGCCGATAGCATCAACACCGTCAAGACCGAACTGCGCAAGCAGGGGGTCAACGTCACCA
AGGTAGCCAAGAAATCCCAGGGGCTCTTCTCCAAGGGCGGCGCCAAGATCAAGCCGATGGATATCGCCATCGTCTCACGC
CAAATAACTACCATGCTCTCCGCCGGTGTACCGCTGGTGCAGAGCCTGCAGATCATCGCCCGCAGTCACGAGAAAGCCTC
GATGCGCGAGCTGATGGGGCAGATTGCAGCCGATGTTGAGACCGGAACCCCCATGTCGGAGGCGCTGCGCCGCCATCCCC
TCTACTTTGACGATCTCTATTGCGATCTGGTGGAAGCCGGTGAGCAATCCGGGGCGCTGGAAACCATCTACGACCGTATC
GCTACCTATCGGGAAAAGTCGGAAGCGCTCAAGTCGAAAATCAAGAAGGCGATGTTTTATCCCACCATGGTCATTCTGGT
CGCCATCGTGGTCACCTCCATCCTGCTGCTGTTCGTCATTCCGCAGTTCGAGGATATCTTCAAGAGCTTTGGTGCCGAGC
TGCCGGTGTTCACCCAGTTTGTCATCGGCATCTCCCGCTTTATGCAGGATTGGTGGTATGTCTTCTTTGGTGGCACGGCC
CTTGGCATCTTCCTCTATGTGCGGGCTTGGCGGGCCTCCCAGAAGGTGAAAGACAATACCGACAAGTTCGTCCTCACCAT
TCCGGTGGTCGGGATGATCCTGCACAAGGCGGCGATGGCTCGCTTTGCTCGCACCCTGTCGACCACCTTCTCCGCCGGTA
TTCCGCTGGTGGATGCGCTGATTTCGGCAGCAGGGGCCTCGGGTAACTATGTCTATCGCACCGCGGTCATGGCGATCCGC
AACGAGGTGGTGGCGGGCATGCAGATCAACGTGGCGATGCGCACCGTCGATCTCTTCCCCGACATGGTGATCCAGATGGT
GATGATCGGTGAGGAGTCCGGCGCCATCGATGATATGCTCTCCAAGGTCGCCACCATCTTCGAACAGGAGGTGGATGACT
TGGTCGATGGCCTCACCAGCCTGCTGGAACCCCTCATCATGGTGGTGCTCGGGGTGCTGGTCGGCGGCATGGTTATCGCC
ATGTACCTGCCCATCTTCAAGCTTGGCGACGTGGTAGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.323

95.884

0.55
  pilC Acinetobacter baumannii D1279779

53.75

96.852

0.521
  pilC Acinetobacter baylyi ADP1

52.645

96.126

0.506
  pilC Legionella pneumophila strain ERS1305867

50.985

98.305

0.501
  pilC Vibrio cholerae strain A1552

46.883

97.094

0.455
  pilC Vibrio campbellii strain DS40M4

45.545

97.821

0.446
  pilG Neisseria gonorrhoeae MS11

40.247

98.063

0.395
  pilG Neisseria meningitidis 44/76-A

40

98.063

0.392
  pilC Thermus thermophilus HB27

38

96.852

0.368