Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QBS12_RS04230 Genome accession   NZ_CP121841
Coordinates   885850..886722 (-) Length   290 a.a.
NCBI ID   WP_279464203.1    Uniprot ID   -
Organism   Aeromonas veronii strain ANYA 18196     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 880850..891722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS12_RS04205 secA 880869..883589 (+) 2721 WP_005336144.1 preprotein translocase subunit SecA -
  QBS12_RS04210 mutT 883775..884179 (+) 405 WP_279464201.1 8-oxo-dGTP diphosphatase MutT -
  QBS12_RS04215 yacG 884258..884452 (-) 195 WP_005336142.1 DNA gyrase inhibitor YacG -
  QBS12_RS04220 zapD 884462..885184 (-) 723 WP_021231281.1 cell division protein ZapD -
  QBS12_RS04225 coaE 885222..885836 (-) 615 WP_279464202.1 dephospho-CoA kinase -
  QBS12_RS04230 pilD 885850..886722 (-) 873 WP_279464203.1 A24 family peptidase Machinery gene
  QBS12_RS04235 pilC 886784..888025 (-) 1242 WP_111899845.1 type II secretion system F family protein Machinery gene
  QBS12_RS04240 pilB 888266..889972 (-) 1707 WP_005336134.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  QBS12_RS04245 - 889982..890428 (-) 447 WP_236271771.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  QBS12_RS04250 nadC 890744..891607 (-) 864 WP_279464204.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 32107.36 Da        Isoelectric Point: 6.5960

>NTDB_id=814576 QBS12_RS04230 WP_279464203.1 885850..886722(-) (pilD) [Aeromonas veronii strain ANYA 18196]
MTLLLELAHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYHGYFSPDEEATAPERYNLMVPRSACPHCGHA
ITALENIPLLSWLWLKGRCRDCQAPISARYPLVELLTALLSVAVAMVITPGWGTLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIILLLSSL
VGAVIGISLIALQKHHQGKPIPFGPYLAIAGWIALLWGDTITRWYLSTLL

Nucleotide


Download         Length: 873 bp        

>NTDB_id=814576 QBS12_RS04230 WP_279464203.1 885850..886722(-) (pilD) [Aeromonas veronii strain ANYA 18196]
ATGACACTTCTTCTCGAGCTGGCTCACAGCTTGCCCTGGCTCTACTTCTCACTGGTTTTTCTCTTCTCCCTGATGATCGG
CAGCTTCCTTAACGTAGTGATCCACCGCTTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAATATCACGGCTACTTTT
CCCCCGATGAGGAGGCTACTGCGCCAGAGCGCTACAACCTGATGGTCCCCCGCTCCGCATGCCCTCATTGTGGCCACGCC
ATCACTGCGCTGGAGAACATCCCGCTGCTGAGCTGGCTCTGGCTCAAAGGGCGTTGCCGCGACTGTCAGGCCCCCATCTC
GGCCCGCTATCCGCTGGTAGAGCTGCTGACCGCACTGCTCTCGGTGGCCGTAGCCATGGTCATAACGCCGGGCTGGGGTA
CGTTGGCCGCCCTGTTGCTGACCTGGGTGCTGGTCGCCCTCACCTTTATCGATCTCGACAAGATGTTGCTGCCCGACCAG
CTCACCCTGCCCCTGCTGTGGGGTGGGCTGCTGTTCAACCTGGCAGGCGGCTTCGTGCCGCTGGCGGATGCCGTGATCGG
TGCCATGGCGGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCTTTCAAGCTGCTCACCGGCAAAGAAGGGATGGGCTATG
GCGACTTCAAGCTGCTGGCGGCGCTGGGCGCCTGGCTCGGTTGGCAGGCGCTGCCCATAATTCTTCTGCTCTCATCTTTG
GTCGGTGCCGTGATCGGCATCAGCCTGATCGCCTTGCAAAAACATCATCAGGGCAAGCCCATTCCCTTCGGCCCCTACCT
CGCCATCGCGGGCTGGATTGCGCTGCTATGGGGCGATACCATCACCCGCTGGTATCTCTCTACCCTGCTTTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(139-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

60.839

98.621

0.6
  pilD Vibrio campbellii strain DS40M4

56.446

98.966

0.559
  pilD Acinetobacter baumannii D1279779

53.597

95.862

0.514
  pilD Acinetobacter nosocomialis M2

53.597

95.862

0.514
  pilD Neisseria gonorrhoeae MS11

49.624

91.724

0.455