Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QBS27_RS00790 Genome accession   NZ_CP121840
Coordinates   158465..159706 (-) Length   413 a.a.
NCBI ID   WP_139433411.1    Uniprot ID   -
Organism   Aeromonas veronii strain ANYA 18197     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 153465..164706
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS27_RS00765 mutT 155456..155860 (+) 405 WP_167573346.1 8-oxo-dGTP diphosphatase MutT -
  QBS27_RS00770 yacG 155939..156133 (-) 195 WP_005336142.1 DNA gyrase inhibitor YacG -
  QBS27_RS00775 zapD 156143..156865 (-) 723 WP_005336141.1 cell division protein ZapD -
  QBS27_RS00780 coaE 156903..157517 (-) 615 WP_100652537.1 dephospho-CoA kinase -
  QBS27_RS00785 pilD 157531..158403 (-) 873 WP_088868329.1 A24 family peptidase Machinery gene
  QBS27_RS00790 pilC 158465..159706 (-) 1242 WP_139433411.1 type II secretion system F family protein Machinery gene
  QBS27_RS00795 pilB 159937..161643 (-) 1707 WP_005336134.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  QBS27_RS00800 - 161647..162102 (-) 456 WP_201943837.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  QBS27_RS00805 nadC 162433..163293 (-) 861 WP_279490123.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QBS27_RS00810 - 163297..163767 (-) 471 WP_005336129.1 retropepsin-like aspartic protease -
  QBS27_RS00815 ampD 163898..164473 (+) 576 WP_279490124.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45455.60 Da        Isoelectric Point: 9.8211

>NTDB_id=814542 QBS27_RS00790 WP_139433411.1 158465..159706(-) (pilC) [Aeromonas veronii strain ANYA 18197]
MATLTKKNNAPKKVFAFRWHGVNRKGQKVSGELQADSINTVKTELRKQGVNVTKVAKKSQGLFSKGGAKIKPMDIAIVSR
QITTMLSAGVPLVQSLQIIARSHEKASMRELMGQIAADVETGTPMSEALRRHPLYFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPVFTRFVIGISRFMQNWWYVFFGGTA
LGIFLYVRAWRASQKVKDNTDKFVLTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVIA
MYLPIFKLGDVVG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=814542 QBS27_RS00790 WP_139433411.1 158465..159706(-) (pilC) [Aeromonas veronii strain ANYA 18197]
ATGGCAACCCTAACGAAAAAGAACAATGCCCCCAAGAAAGTCTTCGCCTTCCGCTGGCACGGGGTAAACCGCAAGGGGCA
GAAGGTCTCCGGCGAGCTGCAGGCCGACAGCATCAACACCGTCAAGACCGAACTGCGCAAGCAGGGGGTCAACGTCACCA
AGGTAGCCAAGAAATCCCAGGGGCTCTTCTCCAAGGGCGGCGCCAAGATCAAGCCGATGGATATCGCCATCGTCTCCCGC
CAAATAACTACCATGCTCTCCGCCGGCGTACCACTAGTACAGAGCCTGCAGATCATCGCCCGCAGCCACGAGAAAGCCTC
GATGCGCGAGCTGATGGGGCAGATTGCCGCCGATGTGGAGACTGGCACCCCCATGTCGGAGGCGCTGCGTCGCCATCCTC
TCTATTTCGATGATCTCTACTGCGATCTGGTGGAAGCCGGTGAGCAATCCGGTGCGCTGGAAACCATCTACGACCGTATC
GCAACCTATCGGGAAAAGTCGGAAGCGCTCAAGTCGAAGATCAAGAAGGCGATGTTCTACCCCACCATGGTCATTCTGGT
CGCCATCGTGGTCACCTCCATCCTGCTGCTGTTCGTCATTCCGCAGTTCGAGGATATCTTCAAGAGCTTCGGCGCCGAGC
TGCCGGTGTTCACCCGGTTTGTTATCGGCATCTCCCGCTTTATGCAGAACTGGTGGTATGTCTTCTTTGGTGGCACGGCC
CTTGGCATCTTCCTTTACGTGCGGGCCTGGCGGGCCTCCCAGAAGGTGAAAGACAATACCGACAAGTTCGTCCTCACCAT
TCCAGTGGTCGGGATGATCCTGCACAAGGCGGCGATGGCCCGCTTTGCCCGCACCCTGTCGACCACCTTCTCCGCCGGTA
TCCCGCTGGTAGATGCGCTGATTTCGGCGGCTGGCGCCTCCGGCAACTATGTCTATCGCACCGCGGTCATGGCCATCCGC
AACGAGGTAGTGGCCGGTATGCAGATCAACGTGGCAATGCGCACCGTCGATCTCTTCCCCGACATGGTGATCCAGATGGT
GATGATCGGTGAGGAGTCCGGTGCCATCGATGATATGCTCTCCAAGGTCGCCACCATCTTCGAACAGGAGGTGGATGATC
TGGTCGATGGCCTCACCAGCCTGCTGGAACCCCTCATCATGGTGGTGCTCGGGGTGCTGGTCGGCGGCATGGTTATCGCC
ATGTACCTGCCCATCTTCAAGCTTGGCGACGTGGTAGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.323

95.884

0.55
  pilC Acinetobacter baumannii D1279779

53.5

96.852

0.518
  pilC Legionella pneumophila strain ERS1305867

51.232

98.305

0.504
  pilC Acinetobacter baylyi ADP1

52.141

96.126

0.501
  pilC Vibrio cholerae strain A1552

46.633

97.094

0.453
  pilC Vibrio campbellii strain DS40M4

45.545

97.821

0.446
  pilG Neisseria gonorrhoeae MS11

40

98.063

0.392
  pilG Neisseria meningitidis 44/76-A

39.753

98.063

0.39
  pilC Thermus thermophilus HB27

38.25

96.852

0.37