Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QBS27_RS00785 Genome accession   NZ_CP121840
Coordinates   157531..158403 (-) Length   290 a.a.
NCBI ID   WP_088868329.1    Uniprot ID   -
Organism   Aeromonas veronii strain ANYA 18197     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 152531..163403
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS27_RS00760 secA 152661..155381 (+) 2721 WP_005336144.1 preprotein translocase subunit SecA -
  QBS27_RS00765 mutT 155456..155860 (+) 405 WP_167573346.1 8-oxo-dGTP diphosphatase MutT -
  QBS27_RS00770 yacG 155939..156133 (-) 195 WP_005336142.1 DNA gyrase inhibitor YacG -
  QBS27_RS00775 zapD 156143..156865 (-) 723 WP_005336141.1 cell division protein ZapD -
  QBS27_RS00780 coaE 156903..157517 (-) 615 WP_100652537.1 dephospho-CoA kinase -
  QBS27_RS00785 pilD 157531..158403 (-) 873 WP_088868329.1 A24 family peptidase Machinery gene
  QBS27_RS00790 pilC 158465..159706 (-) 1242 WP_139433411.1 type II secretion system F family protein Machinery gene
  QBS27_RS00795 pilB 159937..161643 (-) 1707 WP_005336134.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  QBS27_RS00800 - 161647..162102 (-) 456 WP_201943837.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  QBS27_RS00805 nadC 162433..163293 (-) 861 WP_279490123.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 32149.45 Da        Isoelectric Point: 6.8283

>NTDB_id=814541 QBS27_RS00785 WP_088868329.1 157531..158403(-) (pilD) [Aeromonas veronii strain ANYA 18197]
MTLLLELAHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFAPDEEATAPERYNLMVPRSACPHCGHA
ITALENIPLLSWLWLKGRCRDCQAPISARYPLVELLTALLSVAVAMVITPGWGTLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIILLLSSL
VGAVIGISLIALHKHHQGKPIPFGPYLAIAGWIALLWGDTITRWYLSTLL

Nucleotide


Download         Length: 873 bp        

>NTDB_id=814541 QBS27_RS00785 WP_088868329.1 157531..158403(-) (pilD) [Aeromonas veronii strain ANYA 18197]
ATGACACTTCTTCTCGAGCTGGCTCACAGCTTGCCCTGGCTCTACTTCTCGCTGGTTTTTCTCTTCTCCCTGATGATCGG
CAGCTTCCTTAACGTGGTCATCCACCGCTTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAGTATCGCAGCTACTTCG
CCCCTGATGAGGAGGCCACTGCGCCAGAGCGCTACAACCTGATGGTGCCGCGCTCCGCATGCCCTCACTGTGGCCACGCC
ATCACTGCACTGGAGAACATCCCGCTGCTGAGCTGGCTCTGGCTCAAAGGGCGTTGCCGCGACTGTCAGGCGCCCATCTC
GGCCCGCTATCCGCTGGTAGAGCTGCTGACCGCCCTGCTCTCGGTGGCCGTAGCCATGGTCATAACGCCGGGCTGGGGGA
CGCTGGCCGCCCTGTTGCTGACCTGGGTGCTGGTCGCCCTCACCTTCATCGATCTTGACAAGATGCTGCTGCCCGACCAG
CTCACCCTGCCACTGCTGTGGGGTGGGCTGCTGTTCAATCTGGCAGGCGGCTTCGTGCCGCTGGCGGATGCCGTGATCGG
TGCCATGGCGGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCTTTCAAGCTGCTCACTGGCAAGGAGGGGATGGGCTATG
GCGACTTCAAGCTGCTGGCGGCACTGGGCGCCTGGCTCGGCTGGCAGGCGCTGCCCATAATTCTGCTGCTCTCATCCCTG
GTCGGCGCCGTGATCGGCATCAGTCTGATCGCCTTGCACAAACACCATCAGGGCAAGCCCATTCCCTTCGGCCCCTACCT
CGCCATCGCGGGCTGGATCGCCCTGCTGTGGGGCGATACCATCACCCGCTGGTATCTCTCTACCCTGCTTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-126)

Type IV leader peptidase family (Peptidase_A24)

(139-247)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

60.49

98.621

0.597
  pilD Vibrio campbellii strain DS40M4

56.098

98.966

0.555
  pilD Acinetobacter baumannii D1279779

53.597

95.862

0.514
  pilD Acinetobacter nosocomialis M2

53.597

95.862

0.514
  pilD Neisseria gonorrhoeae MS11

49.624

91.724

0.455