Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QBS07_RS02245 Genome accession   NZ_CP121837
Coordinates   473416..474657 (+) Length   413 a.a.
NCBI ID   WP_111899845.1    Uniprot ID   -
Organism   Aeromonas veronii strain ANYA 18263     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 468416..479657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS07_RS02220 ampD 468662..469237 (-) 576 WP_279488474.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  QBS07_RS02225 - 469368..469838 (+) 471 WP_005336129.1 retropepsin-like aspartic protease -
  QBS07_RS02230 nadC 469842..470705 (+) 864 WP_279488475.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QBS07_RS02235 tapA 471033..471459 (+) 427 Protein_415 type IVa pilus major pilin TapA -
  QBS07_RS02240 pilB 471469..473175 (+) 1707 WP_279488476.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  QBS07_RS02245 pilC 473416..474657 (+) 1242 WP_111899845.1 type II secretion system F family protein Machinery gene
  QBS07_RS02250 pilD 474719..475591 (+) 873 WP_279488477.1 A24 family peptidase Machinery gene
  QBS07_RS02255 coaE 475605..476219 (+) 615 WP_279488478.1 dephospho-CoA kinase -
  QBS07_RS02260 zapD 476257..476979 (+) 723 WP_279488479.1 cell division protein ZapD -
  QBS07_RS02265 yacG 476989..477183 (+) 195 WP_005336142.1 DNA gyrase inhibitor YacG -
  QBS07_RS02270 mutT 477261..477665 (-) 405 WP_279488480.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45428.53 Da        Isoelectric Point: 9.6071

>NTDB_id=814516 QBS07_RS02245 WP_111899845.1 473416..474657(+) (pilC) [Aeromonas veronii strain ANYA 18263]
MATLTKKNNAPKKVFAFRWHGVNRKGQKVSGELQADSINTVKTELRKQGVNVTKVAKKSQGLFSKGGAKIKPMDIAIVSR
QITTMLSAGVPLVQSLQIIARSHEKASMRELMGQIAADVETGTPMSEALRRHPLYFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPVFTQFVIGISRFMQDWWYVFFGGTA
LGIFLYVRAWRASQKVKDNTDKFVLTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVIA
MYLPIFKLGDVVG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=814516 QBS07_RS02245 WP_111899845.1 473416..474657(+) (pilC) [Aeromonas veronii strain ANYA 18263]
ATGGCAACCCTAACGAAAAAGAACAATGCCCCCAAGAAAGTCTTCGCCTTCCGCTGGCACGGGGTAAATCGCAAGGGGCA
GAAGGTCTCCGGCGAGCTGCAGGCCGACAGCATCAACACCGTCAAGACCGAACTGCGCAAGCAGGGGGTCAACGTCACCA
AGGTGGCCAAGAAATCCCAGGGGCTCTTCTCCAAGGGCGGCGCCAAGATCAAGCCGATGGATATCGCCATCGTCTCACGC
CAGATCACCACCATGCTCTCCGCCGGTGTACCACTGGTGCAAAGCCTGCAGATCATCGCCCGCAGTCACGAGAAAGCCTC
GATGCGCGAGCTGATGGGGCAGATTGCCGCCGATGTGGAGACTGGTACCCCCATGTCGGAGGCGCTGCGTCGCCATCCCC
TCTACTTTGACGATCTCTACTGCGATCTGGTGGAAGCCGGTGAGCAATCCGGTGCGCTGGAAACCATCTACGACCGTATC
GCCACCTATCGAGAAAAGTCGGAAGCGCTCAAGTCGAAGATCAAGAAGGCGATGTTCTACCCCACCATGGTCATTCTGGT
CGCCATCGTGGTTACCTCCATCCTGCTGCTGTTCGTCATTCCGCAGTTCGAGGATATCTTCAAGAGCTTTGGTGCCGAGC
TGCCGGTGTTCACCCAGTTTGTTATCGGCATCTCCCGCTTTATGCAGGATTGGTGGTATGTCTTCTTTGGTGGCACTGCC
CTTGGCATCTTCCTTTACGTGCGGGCCTGGCGGGCCTCCCAGAAGGTGAAAGACAATACCGACAAGTTCGTCCTCACCAT
TCCGGTGGTCGGGATGATCCTGCACAAGGCGGCCATGGCCCGCTTTGCCCGCACCCTGTCTACCACCTTCTCCGCCGGTA
TTCCGCTGGTGGATGCGCTGATTTCGGCAGCAGGGGCCTCGGGTAACTATGTCTATCGCACCGCCGTCATGGCGATCCGC
AACGAGGTGGTGGCCGGTATGCAGATCAACGTGGCAATGCGCACCGTCGATCTCTTCCCCGACATGGTGATCCAGATGGT
GATGATCGGTGAGGAGTCCGGTGCCATCGATGATATGCTCTCCAAGGTCGCCACCATCTTCGAACAGGAGGTGGATGATC
TGGTCGATGGCCTCACCAGCCTGCTGGAACCCCTCATCATGGTGGTGCTCGGGGTGCTGGTCGGCGGTATGGTTATTGCC
ATGTACCTGCCCATCTTCAAGCTTGGCGACGTGGTAGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.323

95.884

0.55
  pilC Acinetobacter baumannii D1279779

53.75

96.852

0.521
  pilC Acinetobacter baylyi ADP1

52.645

96.126

0.506
  pilC Legionella pneumophila strain ERS1305867

50.985

98.305

0.501
  pilC Vibrio cholerae strain A1552

46.883

97.094

0.455
  pilC Vibrio campbellii strain DS40M4

45.545

97.821

0.446
  pilG Neisseria gonorrhoeae MS11

40.247

98.063

0.395
  pilG Neisseria meningitidis 44/76-A

40

98.063

0.392
  pilC Thermus thermophilus HB27

38

96.852

0.368