Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QBS07_RS02250 Genome accession   NZ_CP121837
Coordinates   474719..475591 (+) Length   290 a.a.
NCBI ID   WP_279488477.1    Uniprot ID   -
Organism   Aeromonas veronii strain ANYA 18263     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 469719..480591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS07_RS02230 nadC 469842..470705 (+) 864 WP_279488475.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QBS07_RS02235 tapA 471033..471459 (+) 427 Protein_415 type IVa pilus major pilin TapA -
  QBS07_RS02240 pilB 471469..473175 (+) 1707 WP_279488476.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  QBS07_RS02245 pilC 473416..474657 (+) 1242 WP_111899845.1 type II secretion system F family protein Machinery gene
  QBS07_RS02250 pilD 474719..475591 (+) 873 WP_279488477.1 A24 family peptidase Machinery gene
  QBS07_RS02255 coaE 475605..476219 (+) 615 WP_279488478.1 dephospho-CoA kinase -
  QBS07_RS02260 zapD 476257..476979 (+) 723 WP_279488479.1 cell division protein ZapD -
  QBS07_RS02265 yacG 476989..477183 (+) 195 WP_005336142.1 DNA gyrase inhibitor YacG -
  QBS07_RS02270 mutT 477261..477665 (-) 405 WP_279488480.1 8-oxo-dGTP diphosphatase MutT -
  QBS07_RS02275 secA 477740..480460 (-) 2721 WP_279488481.1 preprotein translocase subunit SecA -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 32235.58 Da        Isoelectric Point: 6.8283

>NTDB_id=814517 QBS07_RS02250 WP_279488477.1 474719..475591(+) (pilD) [Aeromonas veronii strain ANYA 18263]
MTLLLELAHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFAPDEEATAPERYNLMVPRSACPHCGHA
ITALENIPLLSWIWLKGRCRDCQVPISTRYPLVELLTALLSVAVAMVITPGWGTLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIILLLSSL
VGVVIGISLIALHKHHQGKPIPFGPYLAIAGWIALLWGDTITRWYLSTLL

Nucleotide


Download         Length: 873 bp        

>NTDB_id=814517 QBS07_RS02250 WP_279488477.1 474719..475591(+) (pilD) [Aeromonas veronii strain ANYA 18263]
ATGACACTTCTTCTCGAGCTGGCTCACAGCTTGCCCTGGCTCTACTTCTCGCTGGTTTTTCTCTTCTCCCTGATGATCGG
CAGCTTCCTTAACGTGGTCATCCACCGCTTGCCCATCATGCTGGAACGGGAGTGGCAGGCCGAGTATCGCAGCTACTTCG
CCCCCGATGAGGAGGCTACTGCGCCAGAGCGCTACAACCTGATGGTGCCGCGCTCCGCATGCCCTCACTGTGGCCACGCC
ATCACTGCGCTGGAGAACATCCCGCTGTTGAGCTGGATCTGGCTCAAAGGGCGTTGCCGCGACTGTCAGGTCCCCATCTC
GACCCGCTATCCGCTGGTAGAGCTGCTGACCGCCCTGCTCTCGGTGGCCGTTGCCATGGTCATAACCCCGGGCTGGGGCA
CGCTGGCTGCCCTTCTGCTGACCTGGGTGCTGGTCGCCCTCACCTTTATCGATCTCGACAAGATGTTGCTGCCAGACCAG
CTCACCCTGCCCCTGCTGTGGGGCGGGCTGCTGTTCAATCTGGCTGGTGGCTTCGTGCCGCTGGCGGATGCCGTGATCGG
TGCCATGGCGGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCTTTCAAGCTGCTCACTGGTAAGGAGGGGATGGGCTATG
GCGACTTCAAGCTGCTGGCGGCACTGGGCGCCTGGCTCGGCTGGCAGGCGCTGCCCATAATTCTGCTGCTCTCATCCCTG
GTCGGCGTAGTGATCGGCATCAGTCTGATCGCCTTGCACAAACATCATCAGGGCAAGCCCATCCCCTTCGGCCCCTACCT
CGCCATCGCGGGCTGGATTGCGCTGCTATGGGGCGATACCATCACCCGCTGGTATCTCTCTACCCTGCTTTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(139-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

59.79

98.621

0.59
  pilD Vibrio campbellii strain DS40M4

55.401

98.966

0.548
  pilD Acinetobacter baumannii D1279779

52.878

95.862

0.507
  pilD Acinetobacter nosocomialis M2

52.878

95.862

0.507
  pilD Neisseria gonorrhoeae MS11

49.248

91.724

0.452