Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QBS23_RS18790 Genome accession   NZ_CP121833
Coordinates   3991124..3992365 (-) Length   413 a.a.
NCBI ID   WP_279500695.1    Uniprot ID   -
Organism   Aeromonas veronii strain ANYA 18644     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3986124..3997365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS23_RS18765 mutT 3988117..3988521 (+) 405 WP_204384572.1 8-oxo-dGTP diphosphatase MutT -
  QBS23_RS18770 yacG 3988599..3988793 (-) 195 WP_005336142.1 DNA gyrase inhibitor YacG -
  QBS23_RS18775 zapD 3988803..3989524 (-) 722 Protein_3609 cell division protein ZapD -
  QBS23_RS18780 coaE 3989562..3990176 (-) 615 WP_279500693.1 dephospho-CoA kinase -
  QBS23_RS18785 pilD 3990190..3991062 (-) 873 WP_279500694.1 A24 family peptidase Machinery gene
  QBS23_RS18790 pilC 3991124..3992365 (-) 1242 WP_279500695.1 type II secretion system F family protein Machinery gene
  QBS23_RS18795 pilB 3992520..3994226 (-) 1707 WP_279500696.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  QBS23_RS18800 - 3994226..3994645 (-) 420 WP_279500697.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  QBS23_RS18805 nadC 3994961..3995836 (-) 876 WP_216960555.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QBS23_RS18810 - 3995840..3996310 (-) 471 WP_040068932.1 retropepsin-like aspartic protease -
  QBS23_RS18815 ampD 3996441..3997016 (+) 576 WP_279500698.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45383.49 Da        Isoelectric Point: 9.7221

>NTDB_id=814478 QBS23_RS18790 WP_279500695.1 3991124..3992365(-) (pilC) [Aeromonas veronii strain ANYA 18644]
MATLTKKNNAPKKVFAFRWHGVNRKGQKVSGELQADSINTVKAELRKQGVNVTKVAKKSQGLFSKGGAKIKPMDIAIVSR
QITTMLSAGVPLVQSLQIIARSHEKASMRELMGQIAADVETGTPMSEALRRHPLYFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPVFTQFVIGISRFMQNWWYVFFGGSA
LGIFLYVRAWRASQKVKDNTDKFVLTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVIA
MYLPIFKLGDVVG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=814478 QBS23_RS18790 WP_279500695.1 3991124..3992365(-) (pilC) [Aeromonas veronii strain ANYA 18644]
ATGGCAACCCTAACCAAGAAGAACAATGCCCCCAAAAAAGTCTTCGCCTTCCGCTGGCACGGGGTAAACCGCAAGGGGCA
GAAGGTCTCCGGCGAGCTACAGGCCGACAGCATCAACACTGTCAAGGCCGAGCTGCGCAAGCAGGGGGTCAACGTCACCA
AGGTGGCCAAGAAGTCCCAGGGGCTCTTCTCCAAGGGCGGCGCCAAGATCAAACCGATGGATATCGCCATCGTCTCCCGC
CAGATCACCACCATGCTTTCCGCTGGCGTACCACTGGTGCAGAGCCTGCAGATCATCGCCCGCAGCCACGAGAAAGCCTC
GATGCGCGAGCTGATGGGGCAGATTGCCGCCGATGTGGAGACCGGCACCCCCATGTCGGAGGCGCTGCGCCGCCATCCTC
TCTATTTCGATGATCTCTACTGCGATCTGGTGGAAGCCGGTGAGCAATCCGGTGCGCTGGAGACCATTTACGACCGTATC
GCCACCTATCGGGAAAAGTCGGAGGCACTCAAGTCGAAGATCAAGAAAGCGATGTTCTACCCCACCATGGTCATTCTGGT
CGCCATCGTGGTGACCTCCATCCTGCTGCTGTTCGTCATTCCGCAGTTCGAGGATATCTTCAAGAGCTTTGGCGCCGAGC
TGCCGGTGTTCACCCAGTTTGTCATCGGCATCTCGCGCTTTATGCAGAACTGGTGGTATGTCTTCTTTGGTGGCTCAGCC
CTTGGCATCTTCCTCTATGTGCGCGCCTGGCGGGCCTCCCAGAAGGTGAAAGACAACACCGACAAGTTTGTACTCACCAT
TCCGGTGGTCGGGATGATCCTGCACAAGGCGGCGATGGCTCGCTTTGCCCGCACCCTGTCGACCACCTTCTCCGCCGGTA
TCCCGCTGGTGGATGCGCTGATTTCGGCGGCAGGCGCCTCAGGCAACTATGTCTATCGCACCGCGGTCATGGCGATCCGC
AACGAGGTGGTGGCAGGTATGCAGATCAACGTGGCGATGCGCACCGTCGATCTCTTCCCAGACATGGTGATCCAGATGGT
GATGATCGGTGAGGAGTCCGGTGCCATCGATGATATGCTCTCCAAGGTCGCCACCATCTTCGAACAGGAGGTGGATGATC
TGGTTGATGGCCTCACCAGCCTGCTGGAACCCCTCATCATGGTAGTGCTCGGGGTGCTGGTCGGCGGCATGGTTATTGCC
ATGTACCTGCCCATCTTCAAGCTGGGCGACGTGGTAGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.576

95.884

0.552
  pilC Acinetobacter baumannii D1279779

53.75

96.852

0.521
  pilC Acinetobacter baylyi ADP1

52.882

96.61

0.511
  pilC Legionella pneumophila strain ERS1305867

51.232

98.305

0.504
  pilC Vibrio cholerae strain A1552

46.883

97.094

0.455
  pilC Vibrio campbellii strain DS40M4

45.792

97.821

0.448
  pilG Neisseria gonorrhoeae MS11

40.247

98.063

0.395
  pilG Neisseria meningitidis 44/76-A

40

98.063

0.392
  pilC Thermus thermophilus HB27

38

96.852

0.368