Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QBS23_RS18785 Genome accession   NZ_CP121833
Coordinates   3990190..3991062 (-) Length   290 a.a.
NCBI ID   WP_279500694.1    Uniprot ID   -
Organism   Aeromonas veronii strain ANYA 18644     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3985190..3996062
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS23_RS18760 secA 3985212..3987932 (+) 2721 WP_005336144.1 preprotein translocase subunit SecA -
  QBS23_RS18765 mutT 3988117..3988521 (+) 405 WP_204384572.1 8-oxo-dGTP diphosphatase MutT -
  QBS23_RS18770 yacG 3988599..3988793 (-) 195 WP_005336142.1 DNA gyrase inhibitor YacG -
  QBS23_RS18775 zapD 3988803..3989524 (-) 722 Protein_3609 cell division protein ZapD -
  QBS23_RS18780 coaE 3989562..3990176 (-) 615 WP_279500693.1 dephospho-CoA kinase -
  QBS23_RS18785 pilD 3990190..3991062 (-) 873 WP_279500694.1 A24 family peptidase Machinery gene
  QBS23_RS18790 pilC 3991124..3992365 (-) 1242 WP_279500695.1 type II secretion system F family protein Machinery gene
  QBS23_RS18795 pilB 3992520..3994226 (-) 1707 WP_279500696.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  QBS23_RS18800 - 3994226..3994645 (-) 420 WP_279500697.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  QBS23_RS18805 nadC 3994961..3995836 (-) 876 WP_216960555.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 32131.34 Da        Isoelectric Point: 6.4820

>NTDB_id=814477 QBS23_RS18785 WP_279500694.1 3990190..3991062(-) (pilD) [Aeromonas veronii strain ANYA 18644]
MTLLLELADSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRGYFSPDEEATAPERYNLMVPRSACPHCGHA
ITALENIPLLSWLWLKGRCRDCQAPISARYPLVELLTALLSVAVAMVITPGWGTLAALLLTWLLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLASGFVPLADAVSGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIILLLSSL
VGAVIGISLIALHKHHQGKPIPFGPYLAIAGWIALLWGDTITRWYLSTLL

Nucleotide


Download         Length: 873 bp        

>NTDB_id=814477 QBS23_RS18785 WP_279500694.1 3990190..3991062(-) (pilD) [Aeromonas veronii strain ANYA 18644]
ATGACACTTCTTCTCGAGCTGGCTGACAGCTTGCCCTGGCTCTACTTTTCGCTGGTTTTTCTTTTCTCCCTGATGATCGG
CAGCTTCCTTAACGTGGTCATCCACCGCTTGCCCATTATGTTGGAGCGGGAGTGGCAGGCCGAGTATCGCGGCTACTTTT
CCCCCGATGAGGAGGCCACTGCGCCAGAGCGCTACAACCTGATGGTGCCGCGCTCCGCATGCCCTCACTGTGGTCACGCC
ATCACTGCGCTGGAGAACATCCCGCTGCTGAGCTGGCTCTGGCTCAAAGGGCGTTGCCGCGACTGCCAGGCCCCCATCTC
GGCCCGCTATCCGCTGGTAGAGCTGCTGACAGCCCTGCTCTCGGTGGCCGTTGCCATGGTCATAACACCGGGCTGGGGTA
CGCTGGCCGCCCTATTGCTGACCTGGTTGCTGGTCGCCCTTACCTTCATCGATCTCGACAAGATGTTGCTGCCCGACCAG
CTCACCCTGCCCCTGCTGTGGGGCGGGCTGCTGTTCAATCTGGCAAGTGGCTTCGTCCCCTTGGCTGATGCAGTGAGCGG
CGCCATGGCGGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCTTTCAAGCTGCTAACCGGCAAGGAGGGGATGGGCTATG
GCGACTTCAAGCTGCTGGCGGCGCTGGGCGCATGGCTCGGCTGGCAGGCGCTGCCCATAATTCTGCTGCTCTCATCCCTG
GTCGGCGCCGTGATCGGCATCAGTCTGATCGCCTTGCACAAACACCATCAGGGCAAGCCCATTCCCTTCGGCCCCTACCT
CGCCATCGCGGGCTGGATCGCCCTGCTGTGGGGCGATACCATCACCCGCTGGTATCTCTCTACCCTGCTTTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(139-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-126)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

59.93

98.966

0.593
  pilD Vibrio campbellii strain DS40M4

55.052

98.966

0.545
  pilD Acinetobacter baumannii D1279779

54.104

92.414

0.5
  pilD Acinetobacter nosocomialis M2

54.104

92.414

0.5
  pilD Neisseria gonorrhoeae MS11

49.248

91.724

0.452