Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QBS33_RS01720 Genome accession   NZ_CP121816
Coordinates   355280..356521 (+) Length   413 a.a.
NCBI ID   WP_279496995.1    Uniprot ID   -
Organism   Aeromonas veronii strain ANYA 19953     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 350280..361521
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS33_RS01695 ampD 350523..351098 (-) 576 WP_279496992.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  QBS33_RS01700 - 351229..351699 (+) 471 WP_005336129.1 retropepsin-like aspartic protease -
  QBS33_RS01705 nadC 351703..352572 (+) 870 WP_279496994.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QBS33_RS01710 - 352931..353128 (+) 198 WP_279497724.1 hypothetical protein -
  QBS33_RS01715 pilB 353333..355039 (+) 1707 WP_139411606.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  QBS33_RS01720 pilC 355280..356521 (+) 1242 WP_279496995.1 type II secretion system F family protein Machinery gene
  QBS33_RS01725 pilD 356583..357455 (+) 873 WP_204382262.1 A24 family peptidase Machinery gene
  QBS33_RS01730 coaE 357469..358083 (+) 615 WP_279496996.1 dephospho-CoA kinase -
  QBS33_RS01735 zapD 358121..358843 (+) 723 WP_005336141.1 cell division protein ZapD -
  QBS33_RS01740 yacG 358853..359047 (+) 195 WP_005336142.1 DNA gyrase inhibitor YacG -
  QBS33_RS01745 mutT 359126..359530 (-) 405 WP_279496997.1 8-oxo-dGTP diphosphatase MutT -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45379.50 Da        Isoelectric Point: 9.7221

>NTDB_id=814383 QBS33_RS01720 WP_279496995.1 355280..356521(+) (pilC) [Aeromonas veronii strain ANYA 19953]
MATLTKKNNAPKKVFAFRWHGVNRKGQKVSGELQADSINTVKTELRKQGVNVTKVAKKSQGLFSKGGAKIKPMDIAIVSR
QITTMLSAGVPLVQSLQIIARSHEKASMRELMGQIAADVETGTPMSEALRRHPLYFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPVFTQVVIGISRFMQNWWYVFFGGTA
LGIFLYVRAWRASQKVKDNTDKFVLTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVIA
MYLPIFKLGDVVG

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=814383 QBS33_RS01720 WP_279496995.1 355280..356521(+) (pilC) [Aeromonas veronii strain ANYA 19953]
ATGGCAACCCTAACGAAAAAGAACAATGCCCCCAAGAAAGTCTTCGCCTTCCGCTGGCATGGGGTTAATCGCAAGGGGCA
GAAGGTCTCCGGCGAGCTGCAGGCCGATAGCATCAACACCGTCAAGACCGAACTGCGCAAGCAGGGGGTCAACGTCACCA
AGGTGGCCAAGAAATCCCAAGGGCTCTTCTCCAAGGGTGGCGCCAAGATCAAGCCGATGGATATCGCCATCGTCTCACGC
CAAATAACTACCATGCTCTCCGCCGGTGTACCGCTGGTACAGAGCCTGCAGATCATCGCCCGCAGTCACGAGAAAGCCTC
GATGCGCGAGCTGATGGGGCAAATTGCCGCCGATGTAGAGACCGGCACCCCCATGTCGGAGGCGCTGCGTCGCCATCCTC
TCTATTTCGATGATCTCTACTGCGATCTGGTGGAAGCCGGTGAGCAATCCGGTGCGCTGGAGACCATCTACGACCGTATC
GCCACCTATCGAGAAAAGTCGGAAGCGCTCAAGTCGAAGATCAAGAAGGCGATGTTCTACCCCACCATGGTCATTCTGGT
CGCCATTGTGGTCACCTCCATCCTGCTGCTGTTCGTCATTCCGCAGTTCGAGGATATCTTCAAGAGCTTTGGTGCCGAGC
TACCGGTGTTCACCCAGGTTGTTATCGGCATCTCCCGCTTTATGCAGAACTGGTGGTATGTCTTCTTTGGTGGCACGGCC
CTTGGCATCTTCCTTTACGTGCGGGCCTGGCGGGCCTCCCAGAAGGTGAAAGACAATACCGACAAGTTCGTCCTCACCAT
TCCGGTGGTCGGAATGATCCTGCACAAGGCGGCGATGGCCCGCTTTGCCCGTACTCTGTCAACCACCTTCTCCGCCGGTA
TTCCGCTGGTGGATGCGCTGATTTCGGCGGCTGGCGCCTCCGGCAACTATGTCTATCGCACCGCTGTCATGGCCATCCGC
AACGAGGTGGTGGCCGGTATGCAGATCAACGTTGCAATGCGCACCGTCGATCTCTTCCCCGACATGGTGATCCAGATGGT
GATGATCGGTGAGGAGTCCGGTGCCATCGATGATATGCTCTCCAAGGTCGCCACCATCTTCGAACAGGAGGTGGATGATC
TGGTCGATGGCCTCACCAGCCTGCTGGAACCCCTCATCATGGTGGTGCTCGGGGTGCTGGTCGGCGGCATGGTTATCGCC
ATGTACCTGCCCATCTTCAAGCTTGGCGACGTGGTAGGCTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.323

95.884

0.55
  pilC Acinetobacter baumannii D1279779

53.75

96.852

0.521
  pilC Acinetobacter baylyi ADP1

52.393

96.126

0.504
  pilC Legionella pneumophila strain ERS1305867

50.985

98.305

0.501
  pilC Vibrio cholerae strain A1552

46.883

97.094

0.455
  pilC Vibrio campbellii strain DS40M4

45.792

97.821

0.448
  pilG Neisseria gonorrhoeae MS11

40.247

98.063

0.395
  pilG Neisseria meningitidis 44/76-A

40

98.063

0.392
  pilC Thermus thermophilus HB27

37.75

96.852

0.366