NTDB

Overview

Name	pilD	Type	Machinery gene
Locus tag	QBS33_RS01725	Genome accession	NZ_CP121816
Coordinates	356583..357455 (+)	Length	290 a.a.
NCBI ID	WP_204382262.1	Uniprot ID	-
Organism	Aeromonas veronii strain ANYA 19953
Function	assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 351583..362455

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QBS33_RS01705	nadC	351703..352572 (+)	870	WP_279496994.1	carboxylating nicotinate-nucleotide diphosphorylase	-
QBS33_RS01710	-	352931..353128 (+)	198	WP_279497724.1	hypothetical protein	-
QBS33_RS01715	pilB	353333..355039 (+)	1707	WP_139411606.1	PilB family type IVa pilus assembly ATPase TapB	Machinery gene
QBS33_RS01720	pilC	355280..356521 (+)	1242	WP_279496995.1	type II secretion system F family protein	Machinery gene
QBS33_RS01725	pilD	356583..357455 (+)	873	WP_204382262.1	A24 family peptidase	Machinery gene
QBS33_RS01730	coaE	357469..358083 (+)	615	WP_279496996.1	dephospho-CoA kinase	-
QBS33_RS01735	zapD	358121..358843 (+)	723	WP_005336141.1	cell division protein ZapD	-
QBS33_RS01740	yacG	358853..359047 (+)	195	WP_005336142.1	DNA gyrase inhibitor YacG	-
QBS33_RS01745	mutT	359126..359530 (-)	405	WP_279496997.1	8-oxo-dGTP diphosphatase MutT	-
QBS33_RS01750	secA	359605..362325 (-)	2721	WP_267528810.1	preprotein translocase subunit SecA	-

Sequence

Protein

Download Length: 290 a.a. Molecular weight: 32140.44 Da Isoelectric Point: 6.7414

                                >NTDB_id=814384 QBS33_RS01725 WP_204382262.1 356583..357455(+) (pilD) [Aeromonas veronii strain ANYA 19953]

MTLLLELAHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYRSYFAPDEEATAPERYNLMVPRSACPHCGHA

ITALENIPLLSWLWLKGRCRDCQAPISARYPLVELLTALLSVAVAMVITPGWGTLAALLLTWVLVALTFIDLDKMLLPDQ

LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIILLLSSL

VGAVIGISLIALQKHHQGKPIPFGPYLAIAGWIALLWGDTITRWYLSTLL

Nucleotide

Download Length: 873 bp

                                >NTDB_id=814384 QBS33_RS01725 WP_204382262.1 356583..357455(+) (pilD) [Aeromonas veronii strain ANYA 19953]

ATGACACTTCTTCTCGAGCTGGCTCACAGCTTGCCCTGGCTCTACTTCTCGCTGGTTTTTCTTTTCTCCCTGATGATCGG

CAGTTTCCTCAATGTGGTTATCCACCGCTTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAGTACCGCAGCTACTTCG

CCCCCGATGAGGAGGCCACTGCGCCAGAGCGCTACAACCTGATGGTGCCGCGCTCCGCATGCCCTCACTGTGGCCACGCC

ATCACTGCGCTGGAGAACATCCCGCTGTTGAGCTGGCTCTGGCTCAAAGGGCGTTGCCGCGACTGTCAGGCGCCCATCTC

GGCCCGCTATCCGCTGGTAGAGCTACTGACCGCCCTGCTATCGGTGGCCGTAGCCATGGTCATAACGCCGGGCTGGGGTA

CGTTGGCCGCCCTGTTGCTGACCTGGGTGCTGGTCGCCCTCACCTTTATCGATCTCGACAAGATGTTGCTGCCCGACCAG

CTCACCCTGCCACTACTGTGGGGCGGGCTGCTGTTCAATCTGGCAGGTGGCTTCGTCCCCTTGGCTGATGCAGTGATCGG

CGCCATGGCGGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCTTTCAAACTGCTCACCGGCAAAGAAGGAATGGGTTATG

GCGACTTCAAGCTGCTGGCGGCGCTGGGCGCCTGGCTCGGCTGGCAGGCGCTGCCCATAATTCTGCTGCTCTCATCCCTG

GTCGGCGCCGTGATCGGCATCAGCCTGATCGCCTTGCAAAAACATCATCAGGGCAAGCCCATCCCCTTCGGCCCCTACCT

CGCCATCGCCGGCTGGATTGCGCTGCTATGGGGCGATACCATCACCCGCTGGTATCTCTCAACCCTGCTTTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-126)

Type IV leader peptidase family (Peptidase_A24)

(139-247)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
pilD	Vibrio cholerae strain A1552	60.839	98.621	0.6
pilD	Vibrio campbellii strain DS40M4	56.446	98.966	0.559
pilD	Acinetobacter baumannii D1279779	53.597	95.862	0.514
pilD	Acinetobacter nosocomialis M2	53.597	95.862	0.514
pilD	Neisseria gonorrhoeae MS11	49.624	91.724	0.455

Detailed information NTG0814384