Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QBS22_RS06755 Genome accession   NZ_CP121801
Coordinates   1412156..1413397 (-) Length   413 a.a.
NCBI ID   WP_216988919.1    Uniprot ID   -
Organism   Aeromonas dhakensis strain BOND 19077     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1407156..1418397
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS22_RS06725 - 1408001..1409179 (+) 1179 WP_042049843.1 tetratricopeptide repeat protein -
  QBS22_RS06730 mutT 1409188..1409601 (+) 414 WP_005305665.1 8-oxo-dGTP diphosphatase MutT -
  QBS22_RS06735 yacG 1409663..1409857 (-) 195 WP_042049842.1 DNA gyrase inhibitor YacG -
  QBS22_RS06740 zapD 1409867..1410589 (-) 723 WP_025202564.1 cell division protein ZapD -
  QBS22_RS06745 coaE 1410627..1411241 (-) 615 WP_017766418.1 dephospho-CoA kinase -
  QBS22_RS06750 pilD 1411261..1412133 (-) 873 WP_017779053.1 A24 family peptidase Machinery gene
  QBS22_RS06755 pilC 1412156..1413397 (-) 1242 WP_216988919.1 type II secretion system F family protein Machinery gene
  QBS22_RS06760 pilB 1413513..1415228 (-) 1716 WP_279485524.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  QBS22_RS06765 - 1415219..1415659 (-) 441 WP_010635961.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  QBS22_RS06770 nadC 1415981..1416838 (-) 858 WP_010635962.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QBS22_RS06775 - 1416843..1417313 (-) 471 WP_017779055.1 retropepsin-like aspartic protease -
  QBS22_RS06780 ampD 1417437..1418009 (+) 573 WP_279485217.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45396.56 Da        Isoelectric Point: 9.9637

>NTDB_id=814335 QBS22_RS06755 WP_216988919.1 1412156..1413397(-) (pilC) [Aeromonas dhakensis strain BOND 19077]
MATLTQKQNAPKKVFAFRWSGVNRKGQKVSGELQADSINTVKAELRKQGVNVTKVSKKSQGLFSKGGAKIKPMDIAVVSR
QITTMLSAGVPLVQSLQIIARSHEKAAMRELMGQIAADVETGTPMSEALRRHPRHFDALYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPAFTQFVIGISRFMQNWWYMIFGGVA
LAIFLYVRAWRASQKVRDNTDKFILTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVVA
MYLPIFKLGSVIH

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=814335 QBS22_RS06755 WP_216988919.1 1412156..1413397(-) (pilC) [Aeromonas dhakensis strain BOND 19077]
ATGGCAACGCTAACCCAGAAACAGAATGCCCCCAAGAAAGTCTTCGCCTTTCGCTGGAGCGGGGTGAACCGCAAGGGCCA
GAAGGTCTCAGGCGAGCTGCAGGCCGACAGCATCAATACGGTCAAGGCCGAGCTGCGCAAACAGGGCGTCAACGTCACCA
AGGTGAGCAAGAAGAGCCAGGGACTCTTCTCCAAGGGCGGCGCCAAGATCAAGCCGATGGACATTGCCGTCGTCTCCCGC
CAGATCACCACCATGCTGTCAGCCGGCGTACCTCTGGTCCAGAGCCTGCAGATCATCGCCCGCAGCCACGAGAAGGCGGC
CATGCGCGAGCTCATGGGCCAGATAGCCGCCGATGTGGAGACCGGTACCCCCATGTCCGAGGCACTGCGCCGCCATCCCC
GCCACTTCGATGCACTCTATTGCGACCTGGTCGAGGCGGGCGAGCAGTCCGGCGCGCTGGAGACCATCTACGATCGCATC
GCCACCTATCGGGAAAAATCGGAAGCGCTCAAGTCCAAGATCAAGAAGGCGATGTTCTACCCCACCATGGTCATCCTGGT
CGCCATTGTCGTCACTTCCATTCTGCTGCTGTTTGTCATTCCGCAGTTTGAGGACATCTTCAAGAGTTTCGGCGCCGAGC
TGCCCGCCTTTACCCAGTTCGTCATCGGCATCTCCCGCTTCATGCAGAACTGGTGGTATATGATCTTTGGCGGGGTTGCA
CTCGCCATCTTCCTCTACGTGCGAGCCTGGCGCGCCTCGCAGAAAGTCAGAGACAACACCGACAAGTTCATTCTGACCAT
CCCGGTGGTCGGCATGATATTGCACAAGGCCGCCATGGCCCGCTTCGCCCGCACCCTCTCCACCACCTTTTCTGCTGGTA
TCCCGCTGGTGGATGCCCTGATCTCCGCCGCAGGCGCCTCCGGCAACTATGTCTATCGCACCGCCGTCATGGCCATTCGC
AACGAGGTGGTGGCCGGCATGCAGATCAACGTGGCCATGCGCACCGTCGATCTCTTCCCCGACATGGTGATCCAGATGGT
GATGATTGGCGAGGAGTCAGGCGCCATCGATGATATGCTCTCCAAGGTCGCTACCATCTTCGAACAAGAGGTGGACGATC
TGGTCGACGGCCTCACCAGCCTGCTGGAACCTCTCATCATGGTGGTGCTGGGGGTACTGGTCGGCGGCATGGTGGTCGCC
ATGTACCTGCCCATCTTCAAACTGGGGTCGGTCATCCACTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.323

95.884

0.55
  pilC Acinetobacter baumannii D1279779

54.25

96.852

0.525
  pilC Legionella pneumophila strain ERS1305867

51.605

98.063

0.506
  pilC Acinetobacter baylyi ADP1

52.393

96.126

0.504
  pilC Vibrio cholerae strain A1552

47.99

96.368

0.462
  pilC Vibrio campbellii strain DS40M4

47.355

96.126

0.455
  pilG Neisseria meningitidis 44/76-A

40.494

98.063

0.397
  pilG Neisseria gonorrhoeae MS11

40.494

98.063

0.397
  pilC Thermus thermophilus HB27

38

96.852

0.368