Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QBS22_RS06750 Genome accession   NZ_CP121801
Coordinates   1411261..1412133 (-) Length   290 a.a.
NCBI ID   WP_017779053.1    Uniprot ID   -
Organism   Aeromonas dhakensis strain BOND 19077     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1406261..1417133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS22_RS06725 - 1408001..1409179 (+) 1179 WP_042049843.1 tetratricopeptide repeat protein -
  QBS22_RS06730 mutT 1409188..1409601 (+) 414 WP_005305665.1 8-oxo-dGTP diphosphatase MutT -
  QBS22_RS06735 yacG 1409663..1409857 (-) 195 WP_042049842.1 DNA gyrase inhibitor YacG -
  QBS22_RS06740 zapD 1409867..1410589 (-) 723 WP_025202564.1 cell division protein ZapD -
  QBS22_RS06745 coaE 1410627..1411241 (-) 615 WP_017766418.1 dephospho-CoA kinase -
  QBS22_RS06750 pilD 1411261..1412133 (-) 873 WP_017779053.1 A24 family peptidase Machinery gene
  QBS22_RS06755 pilC 1412156..1413397 (-) 1242 WP_216988919.1 type II secretion system F family protein Machinery gene
  QBS22_RS06760 pilB 1413513..1415228 (-) 1716 WP_279485524.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  QBS22_RS06765 - 1415219..1415659 (-) 441 WP_010635961.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  QBS22_RS06770 nadC 1415981..1416838 (-) 858 WP_010635962.1 carboxylating nicotinate-nucleotide diphosphorylase -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 32453.75 Da        Isoelectric Point: 6.7410

>NTDB_id=814334 QBS22_RS06750 WP_017779053.1 1411261..1412133(-) (pilD) [Aeromonas dhakensis strain BOND 19077]
MLLITDVFHSLSWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLSYFNPETQLQQEERYNLMVPRSACPHCGHA
ITAMENIPLLSWLWLKGRCRECQAPISARYPLVELLTALLSLVVAATFPPSWGLLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLSNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAIIGISLILLRNHHQGKPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide


Download         Length: 873 bp        

>NTDB_id=814334 QBS22_RS06750 WP_017779053.1 1411261..1412133(-) (pilD) [Aeromonas dhakensis strain BOND 19077]
ATGTTGCTGATCACTGACGTTTTTCACAGCCTGTCCTGGCTCTATTTTTCGCTGGTATTCCTCTTCTCTCTGATGATCGG
CAGTTTTCTCAACGTGGTGATCCATCGCCTGCCCATCATGCTGGAGCGGGAGTGGCAGGCCGAATACCTCAGCTATTTCA
ACCCAGAGACACAACTGCAGCAGGAGGAACGCTACAACCTGATGGTGCCGCGTTCTGCCTGCCCCCATTGCGGCCACGCC
ATCACGGCCATGGAGAATATCCCCCTGCTCAGCTGGCTCTGGCTCAAGGGTCGCTGCCGTGAATGTCAGGCCCCCATCTC
GGCCCGTTATCCGCTGGTGGAGCTGCTGACAGCTCTGCTCTCGCTGGTCGTCGCCGCAACATTTCCACCGAGCTGGGGCT
TGCTGGCCGCCCTGCTGCTCACCTGGGTGCTGGTGGCGCTCACTTTCATCGATCTGGACAAGATGCTGCTGCCGGATCAG
CTGACCCTGCCACTGCTGTGGGGTGGCCTGCTGTCCAATCTGGCAGGGGGATTCGTTCCGCTGGCCGATGCGGTGATCGG
TGCCATGGCCGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGCTACG
GCGACTTCAAGCTGCTGGCGGCGCTGGGGGCCTGGCTCGGCTGGCAGGCCCTGCCCATCGTGTTGCTGCTCTCCTCCCTG
GTCGGCGCCATAATAGGGATAAGTCTCATCCTGCTGCGTAACCATCATCAGGGCAAACCCATCCCTTTCGGGCCCTACCT
GGCCATCGCCGGCTGGATCGCGCTGCTGTGGGGCGATACCATCACCCGCTGGTACCTCACGACGTTTCTCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(139-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

61.538

98.621

0.607
  pilD Vibrio campbellii strain DS40M4

58.478

99.655

0.583
  pilD Acinetobacter baumannii D1279779

54.577

97.931

0.534
  pilD Acinetobacter nosocomialis M2

54.577

97.931

0.534
  pilD Neisseria gonorrhoeae MS11

49.084

94.138

0.462