Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QBS35_RS18720 Genome accession   NZ_CP121800
Coordinates   4077304..4078545 (+) Length   413 a.a.
NCBI ID   WP_201879871.1    Uniprot ID   -
Organism   Aeromonas dhakensis strain DAMIAN 19342     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4072304..4083545
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS35_RS18695 ampD 4072703..4073275 (-) 573 WP_279464500.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  QBS35_RS18700 - 4073399..4073869 (+) 471 WP_043171614.1 retropepsin-like aspartic protease -
  QBS35_RS18705 nadC 4073874..4074731 (+) 858 WP_043171615.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QBS35_RS18710 tapA 4075053..4075475 (+) 423 WP_043171616.1 type IVa pilus major pilin TapA -
  QBS35_RS18715 pilB 4075482..4077188 (+) 1707 WP_042049838.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  QBS35_RS18720 pilC 4077304..4078545 (+) 1242 WP_201879871.1 type II secretion system F family protein Machinery gene
  QBS35_RS18725 pilD 4078568..4079440 (+) 873 WP_201879868.1 A24 family peptidase Machinery gene
  QBS35_RS18730 coaE 4079460..4080074 (+) 615 WP_201879854.1 dephospho-CoA kinase -
  QBS35_RS18735 zapD 4080112..4080834 (+) 723 WP_026141001.1 cell division protein ZapD -
  QBS35_RS18740 yacG 4080844..4081038 (+) 195 WP_201879851.1 DNA gyrase inhibitor YacG -
  QBS35_RS18745 mutT 4081099..4081512 (-) 414 WP_005305665.1 8-oxo-dGTP diphosphatase MutT -
  QBS35_RS18750 - 4081521..4082699 (-) 1179 WP_201883625.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 413 a.a.        Molecular weight: 45470.60 Da        Isoelectric Point: 9.8734

>NTDB_id=814316 QBS35_RS18720 WP_201879871.1 4077304..4078545(+) (pilC) [Aeromonas dhakensis strain DAMIAN 19342]
MATLTQKQNAPKKVFAFRWSGVNRKGQKVSGELQADSINTVKAELRKQGVNVTKVSKKSQGLFSKGGAKIKPMDIAVVSR
QITTMLSAGVPLVQSLQIIARSHEKAAMRELMGQIAADVETGTPMSEALRRHPRHFDDLYCDLVEAGEQSGALETIYDRI
ATYREKSEALKSKIKKAMFYPTMVILVAIVVTSILLLFVIPQFEDIFKSFGAELPAFTQFVIGISRFMQNWWYMIFGGVA
LAIFLYVRTWRASQKVRDNTDKFILTIPVVGMILHKAAMARFARTLSTTFSAGIPLVDALISAAGASGNYVYRTAVMAIR
NEVVAGMQINVAMRTVDLFPDMVIQMVMIGEESGAIDDMLSKVATIFEQEVDDLVDGLTSLLEPLIMVVLGVLVGGMVVA
MYLPIFKLGSVIH

Nucleotide


Download         Length: 1242 bp        

>NTDB_id=814316 QBS35_RS18720 WP_201879871.1 4077304..4078545(+) (pilC) [Aeromonas dhakensis strain DAMIAN 19342]
ATGGCAACGCTAACCCAGAAACAGAATGCCCCCAAGAAAGTCTTCGCCTTTCGCTGGAGCGGGGTGAACCGCAAGGGCCA
GAAGGTCTCCGGCGAGTTGCAGGCCGACAGCATCAACACGGTCAAGGCCGAGCTGCGCAAGCAGGGCGTCAACGTCACCA
AGGTGAGCAAGAAGAGCCAGGGGCTCTTCTCCAAGGGTGGCGCCAAGATAAAGCCGATGGATATTGCCGTCGTCTCCCGT
CAGATCACCACCATGCTGTCGGCCGGCGTACCTCTGGTCCAGAGCCTGCAGATCATCGCCCGCAGCCACGAGAAGGCGGC
CATGCGCGAGCTGATGGGCCAGATAGCCGCCGATGTGGAGACCGGCACCCCCATGTCCGAGGCGCTGCGCCGCCATCCCC
GCCACTTCGATGATCTCTATTGCGACCTGGTCGAGGCGGGCGAGCAGTCCGGCGCCCTGGAGACCATCTACGACCGCATC
GCGACTTATCGCGAAAAGTCCGAAGCGCTCAAATCCAAGATCAAGAAGGCCATGTTCTACCCCACCATGGTCATCCTGGT
CGCCATTGTCGTCACCTCCATTCTGTTGCTGTTTGTCATTCCGCAGTTTGAGGACATCTTCAAGAGTTTCGGCGCCGAGC
TGCCCGCCTTTACCCAGTTCGTCATCGGCATCTCCCGCTTCATGCAGAACTGGTGGTATATGATCTTTGGCGGGGTTGCA
CTTGCCATCTTCCTCTACGTGCGAACCTGGCGCGCCTCGCAGAAAGTCAGAGACAACACCGACAAGTTCATTCTGACCAT
CCCGGTGGTCGGCATGATATTGCACAAGGCCGCCATGGCCCGCTTCGCCCGCACCCTCTCCACCACCTTTTCTGCCGGTA
TCCCGCTGGTGGATGCCCTGATCTCCGCCGCAGGCGCCTCCGGCAACTATGTCTATCGCACCGCCGTCATGGCGATTCGC
AACGAGGTGGTGGCCGGCATGCAGATCAACGTGGCCATGCGCACTGTTGATCTGTTCCCCGACATGGTGATCCAGATGGT
GATGATTGGCGAGGAGTCAGGCGCCATCGATGATATGCTCTCCAAGGTCGCCACCATCTTCGAACAGGAGGTGGACGATC
TGGTCGACGGCCTCACCAGCCTGCTGGAACCTCTCATCATGGTGGTGCTGGGGGTACTGGTCGGCGGCATGGTGGTCGCC
ATGTACCTGCCCATCTTCAAACTGGGGTCGGTCATCCACTGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(282-404)

Type II secretion system (T2SS), protein F (T2SSF)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

57.323

95.884

0.55
  pilC Acinetobacter baumannii D1279779

54

96.852

0.523
  pilC Legionella pneumophila strain ERS1305867

51.358

98.063

0.504
  pilC Acinetobacter baylyi ADP1

52.141

96.126

0.501
  pilC Vibrio cholerae strain A1552

47.99

96.368

0.462
  pilC Vibrio campbellii strain DS40M4

47.355

96.126

0.455
  pilG Neisseria meningitidis 44/76-A

40.494

98.063

0.397
  pilG Neisseria gonorrhoeae MS11

40.494

98.063

0.397
  pilC Thermus thermophilus HB27

38

96.852

0.368