Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QBS35_RS18725 Genome accession   NZ_CP121800
Coordinates   4078568..4079440 (+) Length   290 a.a.
NCBI ID   WP_201879868.1    Uniprot ID   -
Organism   Aeromonas dhakensis strain DAMIAN 19342     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4073568..4084440
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBS35_RS18705 nadC 4073874..4074731 (+) 858 WP_043171615.1 carboxylating nicotinate-nucleotide diphosphorylase -
  QBS35_RS18710 tapA 4075053..4075475 (+) 423 WP_043171616.1 type IVa pilus major pilin TapA -
  QBS35_RS18715 pilB 4075482..4077188 (+) 1707 WP_042049838.1 PilB family type IVa pilus assembly ATPase TapB Machinery gene
  QBS35_RS18720 pilC 4077304..4078545 (+) 1242 WP_201879871.1 type II secretion system F family protein Machinery gene
  QBS35_RS18725 pilD 4078568..4079440 (+) 873 WP_201879868.1 A24 family peptidase Machinery gene
  QBS35_RS18730 coaE 4079460..4080074 (+) 615 WP_201879854.1 dephospho-CoA kinase -
  QBS35_RS18735 zapD 4080112..4080834 (+) 723 WP_026141001.1 cell division protein ZapD -
  QBS35_RS18740 yacG 4080844..4081038 (+) 195 WP_201879851.1 DNA gyrase inhibitor YacG -
  QBS35_RS18745 mutT 4081099..4081512 (-) 414 WP_005305665.1 8-oxo-dGTP diphosphatase MutT -
  QBS35_RS18750 - 4081521..4082699 (-) 1179 WP_201883625.1 tetratricopeptide repeat protein -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 32576.95 Da        Isoelectric Point: 6.7410

>NTDB_id=814317 QBS35_RS18725 WP_201879868.1 4078568..4079440(+) (pilD) [Aeromonas dhakensis strain DAMIAN 19342]
MLLITDVFHSLPWLYFSLVFLFSLMIGSFLNVVIHRLPIMLEREWQAEYLSYFNPETQLQQEERYNLMVPRSACPHCGHA
ITAMENIPLLSWLWLKGRCRECQAPISPRYPLVELLTALLSLVVAATFPPGWGLLAALLLTWVLVALTFIDLDKMLLPDQ
LTLPLLWGGLLFNLAGGFVPLADAVIGAMAGYLVLWSLYWAFKLLTGKEGMGYGDFKLLAALGAWLGWQALPIVLLLSSL
VGAIIGISLILLRNHHQNKPIPFGPYLAIAGWIALLWGDTITRWYLTTFL

Nucleotide


Download         Length: 873 bp        

>NTDB_id=814317 QBS35_RS18725 WP_201879868.1 4078568..4079440(+) (pilD) [Aeromonas dhakensis strain DAMIAN 19342]
ATGTTGCTGATCACTGACGTTTTTCACAGCCTGCCCTGGCTCTATTTTTCGCTGGTATTCCTCTTCTCTCTGATGATCGG
CAGTTTTCTCAACGTGGTGATCCATCGCCTGCCCATCATGCTGGAACGGGAGTGGCAGGCCGAATACCTCAGCTATTTCA
ACCCAGAGACACAACTGCAGCAGGAAGAACGCTACAACCTGATGGTGCCGCGTTCTGCCTGCCCCCATTGCGGCCACGCC
ATCACGGCCATGGAGAATATCCCCCTGCTCAGCTGGCTCTGGCTCAAAGGTCGCTGCCGTGAATGTCAGGCCCCCATCTC
GCCCCGTTATCCGCTGGTGGAGCTGTTGACCGCCCTGCTCTCGCTGGTCGTCGCCGCAACATTTCCACCGGGCTGGGGCT
TGCTGGCCGCCCTGCTGCTCACCTGGGTGCTGGTGGCGCTCACTTTCATCGATCTGGACAAGATGCTGCTGCCGGATCAG
CTGACCCTGCCACTGCTGTGGGGTGGCCTGCTGTTCAATCTGGCAGGGGGATTCGTTCCGCTGGCCGATGCGGTGATCGG
TGCCATGGCGGGCTATCTGGTGCTCTGGAGCCTCTACTGGGCCTTCAAGCTGCTGACCGGCAAGGAAGGGATGGGCTACG
GCGACTTCAAGCTGCTGGCGGCGCTGGGGGCCTGGCTGGGCTGGCAGGCCCTGCCCATCGTGTTACTGCTCTCTTCCCTG
GTCGGCGCCATCATAGGGATCAGTCTCATCCTGCTGCGCAACCACCATCAGAACAAACCCATCCCCTTCGGCCCCTACCT
GGCGATCGCCGGCTGGATCGCGTTGCTGTGGGGCGATACCATCACCCGCTGGTACCTCACGACGTTTCTCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(139-247)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(21-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

61.538

98.621

0.607
  pilD Vibrio campbellii strain DS40M4

56.794

98.966

0.562
  pilD Acinetobacter baumannii D1279779

54.577

97.931

0.534
  pilD Acinetobacter nosocomialis M2

54.577

97.931

0.534
  pilD Neisseria gonorrhoeae MS11

49.084

94.138

0.462