Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   QBJ73_RS08775 Genome accession   NZ_CP121776
Coordinates   1846571..1847797 (-) Length   408 a.a.
NCBI ID   WP_010325767.1    Uniprot ID   -
Organism   Acinetobacter johnsonii strain AYTCM     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1841571..1852797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QBJ73_RS08750 (QBJ73_08755) - 1842925..1843248 (+) 324 WP_004692718.1 pyrimidine/purine nucleoside phosphorylase -
  QBJ73_RS08755 (QBJ73_08760) rlmB 1843391..1844140 (+) 750 WP_004692717.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  QBJ73_RS08760 (QBJ73_08765) - 1844173..1845090 (+) 918 WP_029574926.1 DMT family transporter -
  QBJ73_RS08765 (QBJ73_08770) coaE 1845105..1845704 (-) 600 WP_010325765.1 dephospho-CoA kinase -
  QBJ73_RS08770 (QBJ73_08775) pilD 1845711..1846571 (-) 861 WP_010325766.1 A24 family peptidase Machinery gene
  QBJ73_RS08775 (QBJ73_08780) pilC 1846571..1847797 (-) 1227 WP_010325767.1 type II secretion system F family protein Machinery gene
  QBJ73_RS08780 (QBJ73_08785) pilB 1847828..1849540 (-) 1713 WP_308469424.1 type IV-A pilus assembly ATPase PilB Machinery gene
  QBJ73_RS08785 (QBJ73_08790) tpiA 1849820..1850611 (+) 792 WP_010325769.1 triose-phosphate isomerase -
  QBJ73_RS08790 (QBJ73_08795) secG 1850625..1850954 (+) 330 WP_004692710.1 preprotein translocase subunit SecG -
  QBJ73_RS08820 (QBJ73_08825) rimP 1851909..1852433 (+) 525 WP_004692708.1 ribosome maturation factor RimP -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 44814.23 Da        Isoelectric Point: 9.7992

>NTDB_id=814173 QBJ73_RS08775 WP_010325767.1 1846571..1847797(-) (pilC) [Acinetobacter johnsonii strain AYTCM]
MAVKKAQMMPTFNYEGIDRKGAKIKGELPARNLALAKVTLRKQGITIKSIREKKKNILEGILKKKVTTLDITIFTRQLAT
MMKAGVPLVQGFEIVAEGLENPSMREVVLGIKGEVEGGNTFAGALKKYPQYFDNLFCSLVESGEQSGALETMLDRVAVYK
EKSELLKQKIKKAMKYPATVVVVAVIVTIILMVKVVPVFQELFSSFGADLPAFTQMVVNMSEWMQKYWFILIIVVGVVIT
ALLETKKRSKKFRDMLDKAALKAPIFGDLVYKAIIARYSRTLSTTFAAGVPLIDALESTAGATNNVVYEEAVMKIREDVA
TGQQLQFAMRATNKFPSMAVQMVAIGEESGALDAMLDKVATHYENEVDNAVDGLTAMMEPLIMAVLGVLVGGLVIAMYLP
IFQMGSVV

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=814173 QBJ73_RS08775 WP_010325767.1 1846571..1847797(-) (pilC) [Acinetobacter johnsonii strain AYTCM]
ATGGCTGTCAAAAAAGCACAGATGATGCCAACCTTCAATTATGAAGGGATTGATCGTAAAGGGGCAAAAATTAAAGGGGA
ATTGCCTGCACGTAACCTTGCCCTCGCCAAAGTTACTTTGCGCAAACAAGGGATTACCATCAAGAGTATTCGAGAAAAGA
AAAAGAATATTCTTGAAGGCATATTAAAGAAAAAAGTGACCACACTGGACATCACGATTTTCACCCGACAGCTCGCAACC
ATGATGAAAGCGGGTGTACCATTGGTACAAGGCTTTGAAATTGTGGCTGAAGGCTTGGAAAACCCGTCTATGCGTGAAGT
TGTCCTCGGCATTAAAGGTGAAGTTGAAGGCGGTAATACCTTTGCGGGAGCACTCAAAAAATATCCACAATATTTCGACA
ACTTATTCTGTTCATTGGTTGAATCAGGCGAACAATCAGGTGCGCTTGAGACCATGCTGGACCGCGTAGCGGTCTATAAA
GAAAAAAGTGAATTACTGAAACAAAAAATTAAAAAGGCCATGAAATACCCAGCAACCGTGGTTGTGGTTGCTGTGATCGT
GACTATTATTTTGATGGTCAAAGTTGTCCCTGTTTTCCAAGAACTCTTTAGTTCCTTTGGTGCAGACTTACCTGCATTCA
CCCAAATGGTGGTAAATATGTCTGAATGGATGCAGAAATACTGGTTCATTTTGATTATTGTCGTTGGTGTGGTGATTACC
GCTTTACTCGAAACCAAAAAGCGTAGTAAAAAGTTTCGTGACATGCTAGATAAAGCCGCCCTCAAAGCCCCAATTTTTGG
TGATTTAGTCTATAAAGCGATTATCGCGCGCTATAGCCGCACCCTATCGACAACCTTTGCTGCAGGTGTACCCTTAATTG
ATGCCCTCGAATCTACCGCGGGTGCAACCAACAATGTGGTCTATGAAGAAGCTGTGATGAAGATCCGTGAAGATGTCGCA
ACAGGGCAACAACTTCAATTCGCGATGCGTGCCACCAATAAATTTCCATCAATGGCAGTACAAATGGTAGCGATTGGTGA
AGAATCTGGTGCGCTCGATGCCATGTTGGATAAAGTTGCCACTCACTATGAAAACGAAGTCGATAATGCGGTGGATGGCT
TAACGGCAATGATGGAGCCTCTCATCATGGCAGTCTTGGGTGTACTTGTGGGTGGCCTAGTAATTGCCATGTATTTACCA
ATCTTCCAAATGGGTTCTGTGGTTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(279-400)

Type II secretion system (T2SS), protein F (T2SSF)

(74-197)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Acinetobacter baumannii D1279779

88.725

100

0.887
  pilC Acinetobacter baylyi ADP1

82.108

100

0.821
  pilC Pseudomonas stutzeri DSM 10701

61.481

99.265

0.61
  pilC Legionella pneumophila strain ERS1305867

53.333

99.265

0.529
  pilG Neisseria gonorrhoeae MS11

46.985

97.549

0.458
  pilG Neisseria meningitidis 44/76-A

46.985

97.549

0.458
  pilC Vibrio cholerae strain A1552

43.137

100

0.431
  pilC Vibrio campbellii strain DS40M4

41.912

100

0.419
  pilC Thermus thermophilus HB27

37.157

98.284

0.365